Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23865 and AMB_RS23870 are separated by 202 nucleotides AMB_RS23870 and AMB_RS02130 are separated by 446 nucleotides AMB_RS02130 and AMB_RS02135 are separated by 266 nucleotides
AMB_RS23865: AMB_RS23865 - DUF2786 domain-containing protein, at 447,324 to 448,025
_RS23865
AMB_RS23870: AMB_RS23870 - ParA family protein, at 448,228 to 448,884
_RS23870
AMB_RS02130: AMB_RS02130 - hypothetical protein, at 449,331 to 449,561
_RS02130
AMB_RS02135: AMB_RS02135 - acyltransferase, at 449,828 to 450,922
_RS02135
Position (kb) 448
449 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 447.278 kb on - strand at 447.395 kb on + strand, within AMB_RS23865 at 447.620 kb on - strand, within AMB_RS23865 at 447.657 kb on + strand, within AMB_RS23865 at 447.853 kb on + strand, within AMB_RS23865 at 448.024 kb on - strand at 448.046 kb on + strand at 448.073 kb on + strand at 448.073 kb on + strand at 448.088 kb on + strand at 448.089 kb on - strand at 448.092 kb on + strand at 448.093 kb on - strand at 448.096 kb on + strand at 448.096 kb on + strand at 448.145 kb on + strand at 448.145 kb on + strand at 448.335 kb on - strand, within AMB_RS23870 at 448.335 kb on - strand, within AMB_RS23870 at 448.335 kb on - strand, within AMB_RS23870 at 448.335 kb on - strand, within AMB_RS23870 at 448.465 kb on + strand, within AMB_RS23870 at 448.485 kb on + strand, within AMB_RS23870 at 448.485 kb on + strand, within AMB_RS23870 at 448.485 kb on + strand, within AMB_RS23870 at 448.485 kb on + strand, within AMB_RS23870 at 448.508 kb on + strand, within AMB_RS23870 at 448.526 kb on - strand, within AMB_RS23870 at 448.545 kb on - strand, within AMB_RS23870 at 448.545 kb on - strand, within AMB_RS23870 at 448.557 kb on - strand, within AMB_RS23870 at 448.557 kb on - strand, within AMB_RS23870 at 448.629 kb on + strand, within AMB_RS23870 at 448.641 kb on - strand, within AMB_RS23870 at 448.641 kb on - strand, within AMB_RS23870 at 448.709 kb on + strand, within AMB_RS23870 at 448.709 kb on + strand, within AMB_RS23870 at 448.729 kb on + strand, within AMB_RS23870 at 448.729 kb on + strand, within AMB_RS23870 at 448.729 kb on + strand, within AMB_RS23870 at 448.729 kb on + strand, within AMB_RS23870 at 448.730 kb on - strand, within AMB_RS23870 at 448.730 kb on - strand, within AMB_RS23870 at 448.730 kb on - strand, within AMB_RS23870 at 448.760 kb on - strand, within AMB_RS23870 at 448.760 kb on - strand, within AMB_RS23870 at 448.773 kb on + strand, within AMB_RS23870 at 448.851 kb on + strand at 448.854 kb on + strand at 448.855 kb on - strand at 448.862 kb on + strand at 448.862 kb on + strand at 448.862 kb on + strand at 448.863 kb on - strand at 448.867 kb on - strand at 449.057 kb on + strand at 449.057 kb on + strand at 449.057 kb on + strand at 449.058 kb on - strand at 449.058 kb on - strand at 449.058 kb on - strand at 449.155 kb on - strand at 449.176 kb on - strand at 449.540 kb on + strand at 449.553 kb on - strand at 449.567 kb on - strand at 449.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 447,278 - -0.2 447,395 + AMB_RS23865 0.10 +0.9 447,620 - AMB_RS23865 0.42 +0.4 447,657 + AMB_RS23865 0.47 +0.4 447,853 + AMB_RS23865 0.75 +0.4 448,024 - -1.9 448,046 + -1.6 448,073 + -2.4 448,073 + -1.6 448,088 + -4.1 448,089 - +0.4 448,092 + -2.2 448,093 - +0.4 448,096 + -1.2 448,096 + -0.6 448,145 + -1.2 448,145 + -1.6 448,335 - AMB_RS23870 0.16 -2.2 448,335 - AMB_RS23870 0.16 -1.9 448,335 - AMB_RS23870 0.16 -4.2 448,335 - AMB_RS23870 0.16 -0.6 448,465 + AMB_RS23870 0.36 -0.0 448,485 + AMB_RS23870 0.39 +0.4 448,485 + AMB_RS23870 0.39 -0.6 448,485 + AMB_RS23870 0.39 -1.6 448,485 + AMB_RS23870 0.39 -0.7 448,508 + AMB_RS23870 0.43 -0.6 448,526 - AMB_RS23870 0.45 -1.2 448,545 - AMB_RS23870 0.48 -0.6 448,545 - AMB_RS23870 0.48 -1.6 448,557 - AMB_RS23870 0.50 -1.6 448,557 - AMB_RS23870 0.50 -0.9 448,629 + AMB_RS23870 0.61 +0.4 448,641 - AMB_RS23870 0.63 +0.4 448,641 - AMB_RS23870 0.63 +0.4 448,709 + AMB_RS23870 0.73 -2.2 448,709 + AMB_RS23870 0.73 -1.9 448,729 + AMB_RS23870 0.76 -1.6 448,729 + AMB_RS23870 0.76 -1.9 448,729 + AMB_RS23870 0.76 -0.6 448,729 + AMB_RS23870 0.76 -1.2 448,730 - AMB_RS23870 0.76 -0.6 448,730 - AMB_RS23870 0.76 -0.6 448,730 - AMB_RS23870 0.76 -1.2 448,760 - AMB_RS23870 0.81 -1.6 448,760 - AMB_RS23870 0.81 -0.6 448,773 + AMB_RS23870 0.83 -0.6 448,851 + -2.4 448,854 + +1.4 448,855 - -1.6 448,862 + -0.6 448,862 + -1.2 448,862 + -0.6 448,863 - -0.7 448,867 - -0.6 449,057 + -1.6 449,057 + +0.4 449,057 + +0.1 449,058 - +0.4 449,058 - -1.9 449,058 - -1.2 449,155 - +0.4 449,176 - -0.1 449,540 + -0.4 449,553 - -0.6 449,567 - -0.6 449,570 - +0.4
Or see this region's nucleotide sequence