Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02010 and AMB_RS02015 are separated by 2 nucleotides AMB_RS02015 and AMB_RS23830 are separated by 120 nucleotides AMB_RS23830 and AMB_RS23835 are separated by 365 nucleotides
AMB_RS02010: AMB_RS02010 - structural protein, at 423,630 to 424,067
_RS02010
AMB_RS02015: AMB_RS02015 - hypothetical protein, at 424,070 to 424,666
_RS02015
AMB_RS23830: AMB_RS23830 - hypothetical protein, at 424,787 to 425,806
_RS23830
AMB_RS23835: AMB_RS23835 - VWA domain-containing protein, at 426,172 to 428,502
_RS23835
Position (kb) 424
425
426 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 423.810 kb on + strand, within AMB_RS02010 at 423.811 kb on - strand, within AMB_RS02010 at 423.891 kb on + strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.893 kb on + strand, within AMB_RS02010 at 423.894 kb on - strand, within AMB_RS02010 at 423.894 kb on - strand, within AMB_RS02010 at 424.014 kb on + strand, within AMB_RS02010 at 424.015 kb on - strand, within AMB_RS02010 at 424.287 kb on + strand, within AMB_RS02015 at 424.288 kb on - strand, within AMB_RS02015 at 424.333 kb on + strand, within AMB_RS02015 at 424.333 kb on + strand, within AMB_RS02015 at 424.333 kb on + strand, within AMB_RS02015 at 424.334 kb on - strand, within AMB_RS02015 at 424.334 kb on - strand, within AMB_RS02015 at 424.334 kb on - strand, within AMB_RS02015 at 424.334 kb on - strand, within AMB_RS02015 at 424.660 kb on + strand at 424.660 kb on + strand at 424.660 kb on + strand at 424.660 kb on + strand at 424.660 kb on + strand at 424.664 kb on + strand at 424.664 kb on + strand at 424.665 kb on - strand at 424.665 kb on - strand at 424.714 kb on - strand at 424.733 kb on - strand at 424.738 kb on - strand at 424.750 kb on + strand at 424.751 kb on - strand at 424.759 kb on + strand at 424.760 kb on - strand at 424.760 kb on - strand at 424.760 kb on - strand at 424.760 kb on - strand at 424.788 kb on + strand at 424.788 kb on + strand at 424.788 kb on + strand at 424.788 kb on + strand at 424.789 kb on - strand at 424.789 kb on - strand at 424.789 kb on - strand at 424.789 kb on - strand at 424.843 kb on + strand at 424.843 kb on + strand at 424.843 kb on + strand at 424.843 kb on + strand at 424.844 kb on - strand at 424.856 kb on - strand at 424.856 kb on - strand at 424.876 kb on + strand at 424.907 kb on - strand, within AMB_RS23830 at 424.907 kb on - strand, within AMB_RS23830 at 424.913 kb on - strand, within AMB_RS23830 at 424.913 kb on - strand, within AMB_RS23830 at 424.913 kb on - strand, within AMB_RS23830 at 424.918 kb on - strand, within AMB_RS23830 at 424.954 kb on + strand, within AMB_RS23830 at 424.955 kb on - strand, within AMB_RS23830 at 424.962 kb on - strand, within AMB_RS23830 at 425.020 kb on + strand, within AMB_RS23830 at 425.020 kb on + strand, within AMB_RS23830 at 425.020 kb on + strand, within AMB_RS23830 at 425.020 kb on + strand, within AMB_RS23830 at 425.021 kb on - strand, within AMB_RS23830 at 425.075 kb on + strand, within AMB_RS23830 at 425.075 kb on + strand, within AMB_RS23830 at 425.075 kb on + strand, within AMB_RS23830 at 425.076 kb on - strand, within AMB_RS23830 at 425.076 kb on - strand, within AMB_RS23830 at 425.076 kb on - strand, within AMB_RS23830 at 425.076 kb on - strand, within AMB_RS23830 at 425.076 kb on - strand, within AMB_RS23830 at 425.124 kb on - strand, within AMB_RS23830 at 425.187 kb on - strand, within AMB_RS23830 at 425.307 kb on - strand, within AMB_RS23830 at 425.307 kb on - strand, within AMB_RS23830 at 425.433 kb on - strand, within AMB_RS23830 at 425.521 kb on + strand, within AMB_RS23830 at 425.522 kb on - strand, within AMB_RS23830 at 425.524 kb on + strand, within AMB_RS23830 at 425.524 kb on + strand, within AMB_RS23830 at 425.524 kb on + strand, within AMB_RS23830 at 425.525 kb on - strand, within AMB_RS23830 at 425.576 kb on + strand, within AMB_RS23830 at 425.613 kb on + strand, within AMB_RS23830 at 425.650 kb on - strand, within AMB_RS23830 at 425.715 kb on - strand at 425.723 kb on - strand at 425.775 kb on + strand at 425.775 kb on + strand at 425.776 kb on - strand at 425.781 kb on - strand at 425.781 kb on - strand at 425.843 kb on + strand at 425.843 kb on + strand at 425.844 kb on - strand at 425.844 kb on - strand at 425.844 kb on - strand at 426.027 kb on - strand at 426.027 kb on - strand at 426.052 kb on + strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.053 kb on - strand at 426.116 kb on + strand at 426.160 kb on + strand at 426.214 kb on - strand at 426.273 kb on + strand at 426.273 kb on + strand at 426.274 kb on - strand at 426.280 kb on - strand at 426.340 kb on + strand at 426.340 kb on + strand at 426.340 kb on + strand at 426.341 kb on - strand at 426.388 kb on + strand at 426.413 kb on + strand, within AMB_RS23835 at 426.417 kb on + strand, within AMB_RS23835 at 426.417 kb on + strand, within AMB_RS23835 at 426.418 kb on - strand, within AMB_RS23835 at 426.428 kb on + strand, within AMB_RS23835 at 426.428 kb on + strand, within AMB_RS23835 at 426.428 kb on + strand, within AMB_RS23835 at 426.480 kb on + strand, within AMB_RS23835 at 426.481 kb on - strand, within AMB_RS23835 at 426.547 kb on - strand, within AMB_RS23835 at 426.672 kb on + strand, within AMB_RS23835 at 426.740 kb on + strand, within AMB_RS23835 at 426.740 kb on + strand, within AMB_RS23835 at 426.761 kb on + strand, within AMB_RS23835 at 426.761 kb on + strand, within AMB_RS23835 at 426.762 kb on - strand, within AMB_RS23835 at 426.762 kb on - strand, within AMB_RS23835
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 423,810 + AMB_RS02010 0.41 -1.2 423,811 - AMB_RS02010 0.41 -1.6 423,891 + AMB_RS02010 0.60 -0.6 423,892 - AMB_RS02010 0.60 +0.4 423,892 - AMB_RS02010 0.60 +0.4 423,892 - AMB_RS02010 0.60 +0.4 423,892 - AMB_RS02010 0.60 -1.2 423,892 - AMB_RS02010 0.60 -0.6 423,892 - AMB_RS02010 0.60 -2.4 423,892 - AMB_RS02010 0.60 -0.6 423,893 + AMB_RS02010 0.60 +0.4 423,894 - AMB_RS02010 0.60 -1.6 423,894 - AMB_RS02010 0.60 -1.2 424,014 + AMB_RS02010 0.88 -0.0 424,015 - AMB_RS02010 0.88 +0.4 424,287 + AMB_RS02015 0.36 +0.4 424,288 - AMB_RS02015 0.37 -3.3 424,333 + AMB_RS02015 0.44 -1.6 424,333 + AMB_RS02015 0.44 -3.5 424,333 + AMB_RS02015 0.44 -2.2 424,334 - AMB_RS02015 0.44 -0.1 424,334 - AMB_RS02015 0.44 -1.0 424,334 - AMB_RS02015 0.44 -3.5 424,334 - AMB_RS02015 0.44 -0.6 424,660 + -0.6 424,660 + -1.6 424,660 + -0.6 424,660 + -1.2 424,660 + -0.6 424,664 + -0.6 424,664 + +0.4 424,665 - -3.0 424,665 - +0.4 424,714 - -1.6 424,733 - -1.6 424,738 - -0.6 424,750 + -3.4 424,751 - -1.6 424,759 + -0.6 424,760 - +0.4 424,760 - -0.6 424,760 - -0.3 424,760 - -0.2 424,788 + -2.2 424,788 + -1.2 424,788 + -1.4 424,788 + +0.4 424,789 - -1.0 424,789 - -2.0 424,789 - -0.6 424,789 - +0.4 424,843 + -1.6 424,843 + -0.6 424,843 + +0.4 424,843 + -1.6 424,844 - -2.5 424,856 - -0.7 424,856 - -1.2 424,876 + +0.4 424,907 - AMB_RS23830 0.12 +0.4 424,907 - AMB_RS23830 0.12 -1.2 424,913 - AMB_RS23830 0.12 +0.4 424,913 - AMB_RS23830 0.12 -3.9 424,913 - AMB_RS23830 0.12 +0.4 424,918 - AMB_RS23830 0.13 -3.1 424,954 + AMB_RS23830 0.16 -2.4 424,955 - AMB_RS23830 0.16 -2.6 424,962 - AMB_RS23830 0.17 +0.4 425,020 + AMB_RS23830 0.23 -1.9 425,020 + AMB_RS23830 0.23 -0.6 425,020 + AMB_RS23830 0.23 -2.4 425,020 + AMB_RS23830 0.23 -1.2 425,021 - AMB_RS23830 0.23 -2.7 425,075 + AMB_RS23830 0.28 +0.4 425,075 + AMB_RS23830 0.28 -1.6 425,075 + AMB_RS23830 0.28 -2.9 425,076 - AMB_RS23830 0.28 +1.4 425,076 - AMB_RS23830 0.28 -0.6 425,076 - AMB_RS23830 0.28 -1.2 425,076 - AMB_RS23830 0.28 -2.1 425,076 - AMB_RS23830 0.28 -0.3 425,124 - AMB_RS23830 0.33 -0.3 425,187 - AMB_RS23830 0.39 -2.8 425,307 - AMB_RS23830 0.51 +1.4 425,307 - AMB_RS23830 0.51 +0.4 425,433 - AMB_RS23830 0.63 +0.4 425,521 + AMB_RS23830 0.72 -1.2 425,522 - AMB_RS23830 0.72 -1.2 425,524 + AMB_RS23830 0.72 -0.6 425,524 + AMB_RS23830 0.72 -1.2 425,524 + AMB_RS23830 0.72 -1.9 425,525 - AMB_RS23830 0.72 -2.5 425,576 + AMB_RS23830 0.77 -1.9 425,613 + AMB_RS23830 0.81 -1.6 425,650 - AMB_RS23830 0.85 +0.4 425,715 - +0.4 425,723 - -0.6 425,775 + +0.4 425,775 + -3.3 425,776 - -0.6 425,781 - -2.8 425,781 - -2.8 425,843 + -2.4 425,843 + -1.9 425,844 - -1.9 425,844 - -0.4 425,844 - +0.4 426,027 - -0.6 426,027 - +0.4 426,052 + +0.4 426,053 - +0.4 426,053 - -1.2 426,053 - -1.9 426,053 - -0.6 426,053 - +0.4 426,053 - -1.2 426,053 - +0.4 426,116 + +0.4 426,160 + +0.4 426,214 - +0.4 426,273 + -0.6 426,273 + +0.4 426,274 - -1.9 426,280 - -2.4 426,340 + +0.4 426,340 + -1.2 426,340 + +0.1 426,341 - -1.6 426,388 + -0.0 426,413 + AMB_RS23835 0.10 +1.4 426,417 + AMB_RS23835 0.11 +0.4 426,417 + AMB_RS23835 0.11 -1.8 426,418 - AMB_RS23835 0.11 -1.6 426,428 + AMB_RS23835 0.11 +0.4 426,428 + AMB_RS23835 0.11 -2.2 426,428 + AMB_RS23835 0.11 +1.4 426,480 + AMB_RS23835 0.13 -2.2 426,481 - AMB_RS23835 0.13 +0.4 426,547 - AMB_RS23835 0.16 -3.9 426,672 + AMB_RS23835 0.21 -1.2 426,740 + AMB_RS23835 0.24 +0.7 426,740 + AMB_RS23835 0.24 +0.4 426,761 + AMB_RS23835 0.25 -1.6 426,761 + AMB_RS23835 0.25 -0.6 426,762 - AMB_RS23835 0.25 +0.4 426,762 - AMB_RS23835 0.25 +0.2
Or see this region's nucleotide sequence