Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04785 and AMB_RS04790 are separated by 178 nucleotides AMB_RS04790 and AMB_RS23685 are separated by 89 nucleotides AMB_RS23685 and AMB_RS23690 are separated by 6 nucleotides AMB_RS23690 and AMB_RS04800 are separated by 390 nucleotides
AMB_RS04785: AMB_RS04785 - IS5/IS1182 family transposase, at 996,929 to 997,303
_RS04785
AMB_RS04790: AMB_RS04790 - hypothetical protein, at 997,482 to 997,673
_RS04790
AMB_RS23685: AMB_RS23685 - hypothetical protein, at 997,763 to 998,137
_RS23685
AMB_RS23690: AMB_RS23690 - IS110 family transposase, at 998,144 to 998,371
_RS23690
AMB_RS04800: AMB_RS04800 - DUF2384 domain-containing protein, at 998,762 to 999,112
_RS04800
Position (kb) 997
998
999 Strain fitness (log2 ratio) -2
-1
0
1 at 996.772 kb on + strand at 996.773 kb on - strand at 996.951 kb on + strand at 996.951 kb on + strand at 996.952 kb on - strand at 997.053 kb on + strand, within AMB_RS04785 at 997.053 kb on + strand, within AMB_RS04785 at 997.053 kb on + strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.054 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.156 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785 at 997.203 kb on - strand, within AMB_RS04785 at 998.449 kb on - strand at 998.449 kb on - strand at 998.554 kb on + strand at 998.555 kb on - strand at 998.555 kb on - strand at 998.671 kb on + strand at 998.701 kb on + strand at 998.701 kb on + strand at 998.701 kb on + strand at 998.701 kb on + strand at 998.701 kb on + strand at 998.702 kb on - strand at 998.702 kb on - strand at 998.702 kb on - strand at 998.702 kb on - strand at 998.702 kb on - strand at 998.705 kb on + strand at 998.706 kb on - strand at 998.706 kb on - strand at 998.754 kb on - strand at 999.061 kb on + strand, within AMB_RS04800 at 999.061 kb on + strand, within AMB_RS04800 at 999.062 kb on - strand, within AMB_RS04800 at 999.062 kb on - strand, within AMB_RS04800 at 999.062 kb on - strand, within AMB_RS04800
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 996,772 + -0.5 996,773 - +0.5 996,951 + -1.5 996,951 + -2.1 996,952 - -1.1 997,053 + AMB_RS04785 0.33 +0.5 997,053 + AMB_RS04785 0.33 +0.5 997,053 + AMB_RS04785 0.33 +0.5 997,054 - AMB_RS04785 0.33 -0.2 997,054 - AMB_RS04785 0.33 -2.7 997,054 - AMB_RS04785 0.33 -0.9 997,156 - AMB_RS04785 0.61 -1.5 997,156 - AMB_RS04785 0.61 -2.4 997,156 - AMB_RS04785 0.61 -0.3 997,203 - AMB_RS04785 0.73 -0.5 997,203 - AMB_RS04785 0.73 -0.5 997,203 - AMB_RS04785 0.73 +0.5 998,449 - -0.5 998,449 - +0.1 998,554 + -0.5 998,555 - -0.5 998,555 - -1.1 998,671 + -0.5 998,701 + +0.5 998,701 + -0.5 998,701 + -2.1 998,701 + +0.5 998,701 + -0.4 998,702 - -2.7 998,702 - -0.5 998,702 - +0.5 998,702 - -0.5 998,702 - -1.5 998,705 + +0.5 998,706 - -1.1 998,706 - -1.5 998,754 - -0.5 999,061 + AMB_RS04800 0.85 -1.1 999,061 + AMB_RS04800 0.85 +0.4 999,062 - AMB_RS04800 0.85 +0.1 999,062 - AMB_RS04800 0.85 +0.5 999,062 - AMB_RS04800 0.85 +0.5
Or see this region's nucleotide sequence