Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23330

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08830 and AMB_RS08835 are separated by 4 nucleotidesAMB_RS08835 and AMB_RS08840 are separated by 72 nucleotidesAMB_RS08840 and AMB_RS23330 are separated by 54 nucleotidesAMB_RS23330 and AMB_RS08850 are separated by 5 nucleotidesAMB_RS08850 and AMB_RS08855 overlap by 4 nucleotidesAMB_RS08855 and AMB_RS08860 are separated by 2 nucleotidesAMB_RS08860 and AMB_RS24340 are separated by 39 nucleotides AMB_RS08830: AMB_RS08830 - hypothetical protein, at 1,891,574 to 1,891,963 _RS08830 AMB_RS08835: AMB_RS08835 - hypothetical protein, at 1,891,968 to 1,892,171 _RS08835 AMB_RS08840: AMB_RS08840 - transcriptional regulator, at 1,892,244 to 1,892,747 _RS08840 AMB_RS23330: AMB_RS23330 - hypothetical protein, at 1,892,802 to 1,893,638 _RS23330 AMB_RS08850: AMB_RS08850 - hypothetical protein, at 1,893,644 to 1,893,922 _RS08850 AMB_RS08855: AMB_RS08855 - hypothetical protein, at 1,893,919 to 1,894,128 _RS08855 AMB_RS08860: AMB_RS08860 - hypothetical protein, at 1,894,131 to 1,894,460 _RS08860 AMB_RS24340: AMB_RS24340 - DNA cytosine methyltransferase, at 1,894,500 to 1,895,732 _RS24340 Position (kb) 1892 1893 1894Strain fitness (log2 ratio) -3 -2 -1 0 1at 1891.913 kb on - strand, within AMB_RS08830at 1891.999 kb on - strand, within AMB_RS08835at 1892.170 kb on - strandat 1892.170 kb on - strandat 1892.170 kb on - strandat 1892.170 kb on - strandat 1892.249 kb on + strandat 1892.249 kb on + strandat 1892.249 kb on + strandat 1892.249 kb on + strandat 1892.249 kb on + strandat 1892.249 kb on + strandat 1892.249 kb on + strandat 1892.249 kb on + strandat 1892.250 kb on - strandat 1892.250 kb on - strandat 1892.250 kb on - strandat 1892.250 kb on - strandat 1892.250 kb on - strandat 1892.250 kb on - strandat 1892.250 kb on - strandat 1892.250 kb on - strandat 1892.250 kb on - strandat 1892.360 kb on + strand, within AMB_RS08840at 1892.361 kb on - strand, within AMB_RS08840at 1892.446 kb on - strand, within AMB_RS08840at 1892.446 kb on - strand, within AMB_RS08840at 1892.446 kb on - strand, within AMB_RS08840at 1892.446 kb on - strand, within AMB_RS08840at 1892.521 kb on - strand, within AMB_RS08840at 1892.521 kb on - strand, within AMB_RS08840at 1892.701 kb on - strandat 1892.701 kb on - strandat 1892.701 kb on - strandat 1892.701 kb on - strandat 1892.701 kb on - strandat 1892.701 kb on - strandat 1892.787 kb on - strandat 1892.889 kb on + strand, within AMB_RS23330at 1892.890 kb on - strand, within AMB_RS23330at 1893.150 kb on + strand, within AMB_RS23330at 1893.150 kb on + strand, within AMB_RS23330at 1893.150 kb on + strand, within AMB_RS23330at 1893.150 kb on + strand, within AMB_RS23330at 1893.151 kb on - strand, within AMB_RS23330at 1893.151 kb on - strand, within AMB_RS23330at 1893.243 kb on + strand, within AMB_RS23330at 1893.244 kb on - strand, within AMB_RS23330at 1893.440 kb on + strand, within AMB_RS23330at 1893.440 kb on + strand, within AMB_RS23330at 1893.636 kb on + strandat 1893.637 kb on - strandat 1894.027 kb on + strand, within AMB_RS08855at 1894.027 kb on + strand, within AMB_RS08855at 1894.027 kb on + strand, within AMB_RS08855at 1894.027 kb on + strand, within AMB_RS08855at 1894.028 kb on - strand, within AMB_RS08855at 1894.028 kb on - strand, within AMB_RS08855at 1894.028 kb on - strand, within AMB_RS08855at 1894.028 kb on - strand, within AMB_RS08855at 1894.052 kb on - strand, within AMB_RS08855at 1894.187 kb on + strand, within AMB_RS08860at 1894.519 kb on + strandat 1894.519 kb on + strandat 1894.519 kb on + strandat 1894.520 kb on - strandat 1894.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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1,891,913 - AMB_RS08830 0.87 -2.0
1,891,999 - AMB_RS08835 0.15 -2.7
1,892,170 - -3.3
1,892,170 - -0.7
1,892,170 - -0.7
1,892,170 - -2.0
1,892,249 + +0.3
1,892,249 + +0.3
1,892,249 + -0.5
1,892,249 + +0.3
1,892,249 + -3.4
1,892,249 + +0.3
1,892,249 + +0.3
1,892,249 + -1.0
1,892,250 - -1.7
1,892,250 - +0.3
1,892,250 - -0.1
1,892,250 - +0.3
1,892,250 - -1.3
1,892,250 - -2.9
1,892,250 - +0.3
1,892,250 - +0.3
1,892,250 - -1.3
1,892,360 + AMB_RS08840 0.23 +0.3
1,892,361 - AMB_RS08840 0.23 -1.3
1,892,446 - AMB_RS08840 0.40 +0.3
1,892,446 - AMB_RS08840 0.40 -1.3
1,892,446 - AMB_RS08840 0.40 -2.0
1,892,446 - AMB_RS08840 0.40 +0.3
1,892,521 - AMB_RS08840 0.55 +0.3
1,892,521 - AMB_RS08840 0.55 -0.7
1,892,701 - +1.3
1,892,701 - -2.3
1,892,701 - -0.7
1,892,701 - -3.5
1,892,701 - -1.7
1,892,701 - -0.7
1,892,787 - -0.7
1,892,889 + AMB_RS23330 0.10 -2.8
1,892,890 - AMB_RS23330 0.11 +0.3
1,893,150 + AMB_RS23330 0.42 -2.7
1,893,150 + AMB_RS23330 0.42 -1.3
1,893,150 + AMB_RS23330 0.42 -2.5
1,893,150 + AMB_RS23330 0.42 +0.3
1,893,151 - AMB_RS23330 0.42 -3.1
1,893,151 - AMB_RS23330 0.42 +0.3
1,893,243 + AMB_RS23330 0.53 -2.7
1,893,244 - AMB_RS23330 0.53 -1.7
1,893,440 + AMB_RS23330 0.76 -1.3
1,893,440 + AMB_RS23330 0.76 +0.3
1,893,636 + +0.3
1,893,637 - -1.7
1,894,027 + AMB_RS08855 0.51 +0.3
1,894,027 + AMB_RS08855 0.51 -1.3
1,894,027 + AMB_RS08855 0.51 +0.3
1,894,027 + AMB_RS08855 0.51 -2.0
1,894,028 - AMB_RS08855 0.52 -0.4
1,894,028 - AMB_RS08855 0.52 +0.3
1,894,028 - AMB_RS08855 0.52 +0.3
1,894,028 - AMB_RS08855 0.52 -2.8
1,894,052 - AMB_RS08855 0.63 -0.7
1,894,187 + AMB_RS08860 0.17 -0.7
1,894,519 + -1.3
1,894,519 + +0.3
1,894,519 + -0.7
1,894,520 - -2.5
1,894,520 - -1.8

Or see this region's nucleotide sequence