Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23135

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02430 and AMB_RS02435 overlap by 4 nucleotidesAMB_RS02435 and AMB_RS23135 are separated by 2 nucleotidesAMB_RS23135 and AMB_RS02445 are separated by 1 nucleotidesAMB_RS02445 and AMB_RS23880 are separated by 181 nucleotidesAMB_RS23880 and AMB_RS23140 are separated by 64 nucleotides AMB_RS02430: AMB_RS02430 - DUF3486 domain-containing protein, at 504,095 to 504,712 _RS02430 AMB_RS02435: AMB_RS02435 - hypothetical protein, at 504,709 to 505,185 _RS02435 AMB_RS23135: AMB_RS23135 - DUF2163 domain-containing protein, at 505,188 to 506,078 _RS23135 AMB_RS02445: AMB_RS02445 - hydrolase, at 506,080 to 506,532 _RS02445 AMB_RS23880: AMB_RS23880 - RNA-binding protein, at 506,714 to 506,776 _RS23880 AMB_RS23140: AMB_RS23140 - hypothetical protein, at 506,841 to 509,726 _RS23140 Position (kb) 505 506 507Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 504.433 kb on + strand, within AMB_RS02430at 504.692 kb on + strandat 504.692 kb on + strandat 504.949 kb on + strand, within AMB_RS02435at 504.949 kb on + strand, within AMB_RS02435at 504.950 kb on - strand, within AMB_RS02435at 504.950 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 504.980 kb on - strand, within AMB_RS02435at 505.015 kb on + strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.016 kb on - strand, within AMB_RS02435at 505.084 kb on + strand, within AMB_RS02435at 505.084 kb on + strand, within AMB_RS02435at 505.085 kb on - strand, within AMB_RS02435at 505.085 kb on - strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.087 kb on + strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.088 kb on - strand, within AMB_RS02435at 505.183 kb on + strandat 505.183 kb on + strandat 505.183 kb on + strandat 505.184 kb on - strandat 505.184 kb on - strandat 505.184 kb on - strandat 505.254 kb on + strandat 505.254 kb on + strandat 505.291 kb on - strand, within AMB_RS23135at 505.359 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.530 kb on + strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.531 kb on - strand, within AMB_RS23135at 505.696 kb on - strand, within AMB_RS23135at 506.034 kb on + strandat 506.035 kb on - strandat 506.143 kb on + strand, within AMB_RS02445at 506.143 kb on + strand, within AMB_RS02445at 506.143 kb on + strand, within AMB_RS02445at 506.144 kb on - strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.245 kb on + strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.246 kb on - strand, within AMB_RS02445at 506.248 kb on + strand, within AMB_RS02445at 506.248 kb on + strand, within AMB_RS02445at 506.249 kb on - strand, within AMB_RS02445at 506.288 kb on - strand, within AMB_RS02445at 506.288 kb on - strand, within AMB_RS02445at 506.288 kb on - strand, within AMB_RS02445at 506.509 kb on + strandat 506.509 kb on + strandat 506.509 kb on + strandat 506.510 kb on - strandat 506.622 kb on + strandat 506.682 kb on + strandat 506.787 kb on + strandat 506.787 kb on + strandat 506.787 kb on + strandat 506.788 kb on - strandat 506.788 kb on - strandat 506.788 kb on - strandat 506.793 kb on + strandat 506.793 kb on + strandat 506.793 kb on + strandat 506.793 kb on + strandat 506.793 kb on + strandat 506.794 kb on - strandat 506.794 kb on - strandat 506.794 kb on - strandat 506.794 kb on - strandat 506.934 kb on + strandat 506.934 kb on + strandat 506.934 kb on + strandat 506.934 kb on + strandat 506.935 kb on - strandat 506.935 kb on - strandat 506.935 kb on - strandat 506.935 kb on - strandat 506.972 kb on + strandat 506.973 kb on - strandat 506.994 kb on + strandat 507.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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504,433 + AMB_RS02430 0.55 -3.5
504,692 + -0.6
504,692 + +0.4
504,949 + AMB_RS02435 0.50 -0.6
504,949 + AMB_RS02435 0.50 -0.6
504,950 - AMB_RS02435 0.51 -2.9
504,950 - AMB_RS02435 0.51 +0.4
504,980 - AMB_RS02435 0.57 -2.6
504,980 - AMB_RS02435 0.57 -0.6
504,980 - AMB_RS02435 0.57 -0.6
504,980 - AMB_RS02435 0.57 +0.4
504,980 - AMB_RS02435 0.57 -1.2
504,980 - AMB_RS02435 0.57 -1.6
505,015 + AMB_RS02435 0.64 -1.2
505,016 - AMB_RS02435 0.64 -1.2
505,016 - AMB_RS02435 0.64 +0.4
505,016 - AMB_RS02435 0.64 -2.6
505,016 - AMB_RS02435 0.64 -0.6
505,016 - AMB_RS02435 0.64 -3.5
505,084 + AMB_RS02435 0.79 -1.9
505,084 + AMB_RS02435 0.79 +0.4
505,085 - AMB_RS02435 0.79 -0.6
505,085 - AMB_RS02435 0.79 -1.2
505,087 + AMB_RS02435 0.79 +0.4
505,087 + AMB_RS02435 0.79 -1.6
505,087 + AMB_RS02435 0.79 -0.6
505,088 - AMB_RS02435 0.79 -0.2
505,088 - AMB_RS02435 0.79 -1.9
505,088 - AMB_RS02435 0.79 -0.6
505,183 + -1.6
505,183 + +0.4
505,183 + -0.9
505,184 - -2.4
505,184 - -1.9
505,184 - +0.4
505,254 + -0.6
505,254 + -0.6
505,291 - AMB_RS23135 0.12 -2.6
505,359 + AMB_RS23135 0.19 +0.4
505,530 + AMB_RS23135 0.38 -1.6
505,530 + AMB_RS23135 0.38 -2.3
505,530 + AMB_RS23135 0.38 -1.9
505,530 + AMB_RS23135 0.38 -2.6
505,530 + AMB_RS23135 0.38 -1.4
505,531 - AMB_RS23135 0.38 +1.4
505,531 - AMB_RS23135 0.38 -0.6
505,531 - AMB_RS23135 0.38 +0.4
505,696 - AMB_RS23135 0.57 -1.9
506,034 + -1.2
506,035 - -1.2
506,143 + AMB_RS02445 0.14 -0.4
506,143 + AMB_RS02445 0.14 +0.4
506,143 + AMB_RS02445 0.14 -1.2
506,144 - AMB_RS02445 0.14 +0.4
506,245 + AMB_RS02445 0.36 -1.6
506,245 + AMB_RS02445 0.36 -2.2
506,245 + AMB_RS02445 0.36 -1.9
506,245 + AMB_RS02445 0.36 -0.6
506,245 + AMB_RS02445 0.36 -1.2
506,246 - AMB_RS02445 0.37 -1.6
506,246 - AMB_RS02445 0.37 -2.4
506,246 - AMB_RS02445 0.37 -1.2
506,246 - AMB_RS02445 0.37 +0.4
506,246 - AMB_RS02445 0.37 +0.4
506,246 - AMB_RS02445 0.37 +0.4
506,248 + AMB_RS02445 0.37 -0.6
506,248 + AMB_RS02445 0.37 -1.2
506,249 - AMB_RS02445 0.37 -1.2
506,288 - AMB_RS02445 0.46 -1.9
506,288 - AMB_RS02445 0.46 +0.4
506,288 - AMB_RS02445 0.46 +0.4
506,509 + -4.1
506,509 + +0.4
506,509 + -3.8
506,510 - -0.6
506,622 + -0.0
506,682 + -1.6
506,787 + -1.6
506,787 + +0.4
506,787 + -2.4
506,788 - -1.9
506,788 - -0.6
506,788 - -3.4
506,793 + -1.2
506,793 + +0.4
506,793 + -0.6
506,793 + +0.4
506,793 + -1.9
506,794 - -3.5
506,794 - -0.6
506,794 - -1.3
506,794 - +0.4
506,934 + -0.5
506,934 + +0.4
506,934 + -0.6
506,934 + -1.2
506,935 - -1.6
506,935 - +0.4
506,935 - +0.4
506,935 - +0.4
506,972 + +0.4
506,973 - -2.6
506,994 + -1.6
507,013 - -0.4

Or see this region's nucleotide sequence