Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23035

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS23030 and AMB_RS23035 overlap by 7 nucleotidesAMB_RS23035 and AMB_RS23040 are separated by 202 nucleotides AMB_RS23030: AMB_RS23030 - ferrochelatase, at 4,959,553 to 4,960,566 _RS23030 AMB_RS23035: AMB_RS23035 - protoporphyrinogen oxidase HemJ, at 4,960,560 to 4,960,997 _RS23035 AMB_RS23040: AMB_RS23040 - transcription termination factor Rho, at 4,961,200 to 4,962,456 _RS23040 Position (kb) 4960 4961Strain fitness (log2 ratio) -1 0 1at 4961.154 kb on + strandat 4961.154 kb on + strandat 4961.154 kb on + strandat 4961.154 kb on + strandat 4961.154 kb on + strandat 4961.154 kb on + strandat 4961.154 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
4,961,154 + -0.2
4,961,154 + -0.6
4,961,154 + -1.6
4,961,154 + +0.4
4,961,154 + +0.4
4,961,154 + +0.2
4,961,154 + +0.4

Or see this region's nucleotide sequence