Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22775

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22770 and AMB_RS22775 are separated by 1 nucleotidesAMB_RS22775 and AMB_RS22780 overlap by 46 nucleotidesAMB_RS22780 and AMB_RS22785 overlap by 4 nucleotides AMB_RS22770: AMB_RS22770 - radical SAM protein, at 4,914,509 to 4,915,636 _RS22770 AMB_RS22775: AMB_RS22775 - penicillin-binding protein activator, at 4,915,638 to 4,917,008 _RS22775 AMB_RS22780: AMB_RS22780 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 4,916,963 to 4,917,937 _RS22780 AMB_RS22785: AMB_RS22785 - YraN family protein, at 4,917,934 to 4,918,323 _RS22785 Position (kb) 4915 4916 4917 4918Strain fitness (log2 ratio) -2 -1 0 1at 4915.271 kb on + strand, within AMB_RS22770at 4915.272 kb on - strand, within AMB_RS22770at 4915.272 kb on - strand, within AMB_RS22770at 4915.272 kb on - strand, within AMB_RS22770at 4915.639 kb on + strandat 4915.846 kb on + strand, within AMB_RS22775at 4916.048 kb on - strand, within AMB_RS22775at 4916.048 kb on - strand, within AMB_RS22775at 4916.204 kb on - strand, within AMB_RS22775at 4916.204 kb on - strand, within AMB_RS22775at 4917.398 kb on - strand, within AMB_RS22780at 4917.398 kb on - strand, within AMB_RS22780

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,915,271 + AMB_RS22770 0.68 -2.2
4,915,272 - AMB_RS22770 0.68 -0.6
4,915,272 - AMB_RS22770 0.68 -0.6
4,915,272 - AMB_RS22770 0.68 -0.6
4,915,639 + -2.6
4,915,846 + AMB_RS22775 0.15 -1.2
4,916,048 - AMB_RS22775 0.30 -0.9
4,916,048 - AMB_RS22775 0.30 -1.2
4,916,204 - AMB_RS22775 0.41 -1.5
4,916,204 - AMB_RS22775 0.41 +0.4
4,917,398 - AMB_RS22780 0.45 +0.0
4,917,398 - AMB_RS22780 0.45 -2.4

Or see this region's nucleotide sequence