Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22730

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22725 and AMB_RS22730 are separated by 135 nucleotidesAMB_RS22730 and AMB_RS22735 are separated by 331 nucleotides AMB_RS22725: AMB_RS22725 - diaminopimelate decarboxylase, at 4,902,702 to 4,903,976 _RS22725 AMB_RS22730: AMB_RS22730 - DUF4175 domain-containing protein, at 4,904,112 to 4,906,427 _RS22730 AMB_RS22735: AMB_RS22735 - DUF3426 domain-containing protein, at 4,906,759 to 4,907,814 _RS22735 Position (kb) 4904 4905 4906 4907Strain fitness (log2 ratio) -2 -1 0 1at 4904.031 kb on + strandat 4904.623 kb on - strand, within AMB_RS22730at 4906.529 kb on - strandat 4906.556 kb on - strandat 4906.643 kb on + strandat 4906.644 kb on - strandat 4906.644 kb on - strandat 4906.674 kb on + strandat 4906.760 kb on + strandat 4906.761 kb on - strandat 4906.761 kb on - strandat 4906.761 kb on - strandat 4906.761 kb on - strandat 4906.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,904,031 + +0.4
4,904,623 - AMB_RS22730 0.22 -1.6
4,906,529 - +1.4
4,906,556 - +0.2
4,906,643 + -0.6
4,906,644 - -1.6
4,906,644 - +0.4
4,906,674 + -0.1
4,906,760 + +0.4
4,906,761 - -2.0
4,906,761 - +0.4
4,906,761 - -0.6
4,906,761 - +0.4
4,906,827 + -2.2

Or see this region's nucleotide sequence