Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22705 and AMB_RS22710 are separated by 74 nucleotides AMB_RS22710 and AMB_RS22715 are separated by 164 nucleotides
AMB_RS22705: AMB_RS22705 - alanine dehydrogenase, at 4,898,384 to 4,899,505
_RS22705
AMB_RS22710: AMB_RS22710 - MFS transporter, at 4,899,580 to 4,900,917
_RS22710
AMB_RS22715: AMB_RS22715 - argininosuccinate lyase, at 4,901,082 to 4,902,497
_RS22715
Position (kb) 4899
4900
4901 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4898.620 kb on - strand, within AMB_RS22705 at 4898.620 kb on - strand, within AMB_RS22705 at 4898.620 kb on - strand, within AMB_RS22705 at 4898.624 kb on + strand, within AMB_RS22705 at 4898.625 kb on - strand, within AMB_RS22705 at 4898.625 kb on - strand, within AMB_RS22705 at 4898.625 kb on - strand, within AMB_RS22705 at 4898.643 kb on + strand, within AMB_RS22705 at 4898.643 kb on + strand, within AMB_RS22705 at 4898.643 kb on + strand, within AMB_RS22705 at 4898.643 kb on + strand, within AMB_RS22705 at 4898.643 kb on + strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.644 kb on - strand, within AMB_RS22705 at 4898.851 kb on - strand, within AMB_RS22705 at 4898.993 kb on + strand, within AMB_RS22705 at 4898.993 kb on + strand, within AMB_RS22705 at 4898.993 kb on + strand, within AMB_RS22705 at 4898.993 kb on + strand, within AMB_RS22705 at 4898.994 kb on - strand, within AMB_RS22705 at 4899.157 kb on - strand, within AMB_RS22705 at 4899.225 kb on + strand, within AMB_RS22705 at 4899.225 kb on + strand, within AMB_RS22705 at 4899.225 kb on + strand, within AMB_RS22705 at 4899.225 kb on + strand, within AMB_RS22705 at 4899.225 kb on + strand, within AMB_RS22705 at 4899.225 kb on + strand, within AMB_RS22705 at 4899.225 kb on + strand, within AMB_RS22705 at 4899.226 kb on - strand, within AMB_RS22705 at 4899.226 kb on - strand, within AMB_RS22705 at 4899.226 kb on - strand, within AMB_RS22705 at 4899.226 kb on - strand, within AMB_RS22705 at 4899.226 kb on - strand, within AMB_RS22705 at 4899.226 kb on - strand, within AMB_RS22705 at 4899.465 kb on + strand at 4899.908 kb on + strand, within AMB_RS22710 at 4900.040 kb on + strand, within AMB_RS22710 at 4900.041 kb on - strand, within AMB_RS22710 at 4900.077 kb on - strand, within AMB_RS22710 at 4900.257 kb on - strand, within AMB_RS22710 at 4900.924 kb on - strand at 4900.924 kb on - strand at 4900.924 kb on - strand at 4900.924 kb on - strand at 4900.924 kb on - strand at 4901.040 kb on + strand at 4901.040 kb on + strand at 4901.040 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,898,620 - AMB_RS22705 0.21 -0.9 4,898,620 - AMB_RS22705 0.21 +0.4 4,898,620 - AMB_RS22705 0.21 +0.4 4,898,624 + AMB_RS22705 0.21 -2.8 4,898,625 - AMB_RS22705 0.21 +0.4 4,898,625 - AMB_RS22705 0.21 -0.6 4,898,625 - AMB_RS22705 0.21 -0.6 4,898,643 + AMB_RS22705 0.23 +0.4 4,898,643 + AMB_RS22705 0.23 -0.6 4,898,643 + AMB_RS22705 0.23 -0.6 4,898,643 + AMB_RS22705 0.23 -0.2 4,898,643 + AMB_RS22705 0.23 -2.0 4,898,644 - AMB_RS22705 0.23 -1.6 4,898,644 - AMB_RS22705 0.23 +0.4 4,898,644 - AMB_RS22705 0.23 -3.5 4,898,644 - AMB_RS22705 0.23 -1.9 4,898,644 - AMB_RS22705 0.23 -1.2 4,898,644 - AMB_RS22705 0.23 -1.4 4,898,644 - AMB_RS22705 0.23 +0.0 4,898,644 - AMB_RS22705 0.23 -1.6 4,898,644 - AMB_RS22705 0.23 -3.9 4,898,644 - AMB_RS22705 0.23 -0.1 4,898,644 - AMB_RS22705 0.23 +0.4 4,898,851 - AMB_RS22705 0.42 -0.2 4,898,993 + AMB_RS22705 0.54 -1.6 4,898,993 + AMB_RS22705 0.54 -2.0 4,898,993 + AMB_RS22705 0.54 -1.2 4,898,993 + AMB_RS22705 0.54 -0.6 4,898,994 - AMB_RS22705 0.54 -0.6 4,899,157 - AMB_RS22705 0.69 +0.4 4,899,225 + AMB_RS22705 0.75 -3.5 4,899,225 + AMB_RS22705 0.75 +0.4 4,899,225 + AMB_RS22705 0.75 -1.6 4,899,225 + AMB_RS22705 0.75 -0.6 4,899,225 + AMB_RS22705 0.75 -2.0 4,899,225 + AMB_RS22705 0.75 -2.0 4,899,225 + AMB_RS22705 0.75 +0.4 4,899,226 - AMB_RS22705 0.75 -0.6 4,899,226 - AMB_RS22705 0.75 -0.1 4,899,226 - AMB_RS22705 0.75 +0.4 4,899,226 - AMB_RS22705 0.75 -1.6 4,899,226 - AMB_RS22705 0.75 -1.2 4,899,226 - AMB_RS22705 0.75 -0.5 4,899,465 + +1.4 4,899,908 + AMB_RS22710 0.25 +0.4 4,900,040 + AMB_RS22710 0.34 -2.6 4,900,041 - AMB_RS22710 0.34 -0.6 4,900,077 - AMB_RS22710 0.37 -2.6 4,900,257 - AMB_RS22710 0.51 -1.2 4,900,924 - +0.4 4,900,924 - -1.2 4,900,924 - -0.0 4,900,924 - -0.6 4,900,924 - -0.6 4,901,040 + -0.1 4,901,040 + +0.4 4,901,040 + +0.4
Or see this region's nucleotide sequence