Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22670 and AMB_RS22675 are separated by 12 nucleotides AMB_RS22675 and AMB_RS22680 are separated by 51 nucleotides AMB_RS22680 and AMB_RS22685 are separated by 181 nucleotides
AMB_RS22670: AMB_RS22670 - hypothetical protein, at 4,892,919 to 4,894,037
_RS22670
AMB_RS22675: AMB_RS22675 - hypothetical protein, at 4,894,050 to 4,894,436
_RS22675
AMB_RS22680: AMB_RS22680 - hypothetical protein, at 4,894,488 to 4,895,096
_RS22680
AMB_RS22685: AMB_RS22685 - hypothetical protein, at 4,895,278 to 4,895,748
_RS22685
Position (kb) 4894
4895 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4893.607 kb on + strand, within AMB_RS22670 at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.446 kb on - strand at 4894.473 kb on - strand at 4894.473 kb on - strand at 4894.482 kb on - strand at 4894.482 kb on - strand at 4894.666 kb on + strand, within AMB_RS22680 at 4894.666 kb on + strand, within AMB_RS22680 at 4894.666 kb on + strand, within AMB_RS22680 at 4894.667 kb on - strand, within AMB_RS22680 at 4894.994 kb on - strand, within AMB_RS22680 at 4894.999 kb on + strand, within AMB_RS22680 at 4894.999 kb on + strand, within AMB_RS22680 at 4894.999 kb on + strand, within AMB_RS22680 at 4895.000 kb on - strand, within AMB_RS22680 at 4895.176 kb on + strand at 4895.177 kb on - strand at 4895.177 kb on - strand at 4895.225 kb on - strand at 4895.236 kb on + strand at 4895.237 kb on - strand at 4895.237 kb on - strand at 4895.274 kb on + strand at 4895.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,893,607 + AMB_RS22670 0.61 -1.6 4,894,446 - -2.2 4,894,446 - -1.2 4,894,446 - -1.6 4,894,446 - +0.4 4,894,446 - -2.0 4,894,446 - -0.3 4,894,446 - +0.4 4,894,446 - +0.4 4,894,446 - -1.2 4,894,446 - -1.4 4,894,446 - -2.0 4,894,473 - +0.2 4,894,473 - +0.4 4,894,482 - -0.6 4,894,482 - +0.4 4,894,666 + AMB_RS22680 0.29 +0.4 4,894,666 + AMB_RS22680 0.29 +0.4 4,894,666 + AMB_RS22680 0.29 -0.0 4,894,667 - AMB_RS22680 0.29 -0.6 4,894,994 - AMB_RS22680 0.83 -3.4 4,894,999 + AMB_RS22680 0.84 -1.2 4,894,999 + AMB_RS22680 0.84 -1.6 4,894,999 + AMB_RS22680 0.84 -2.6 4,895,000 - AMB_RS22680 0.84 -1.2 4,895,176 + -1.6 4,895,177 - -0.6 4,895,177 - -2.0 4,895,225 - +0.4 4,895,236 + -3.3 4,895,237 - -1.6 4,895,237 - +0.4 4,895,274 + +0.4 4,895,275 - -3.3
Or see this region's nucleotide sequence