Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22650

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22640 and AMB_RS22645 are separated by 91 nucleotidesAMB_RS22645 and AMB_RS22650 are separated by 244 nucleotidesAMB_RS22650 and AMB_RS22655 are separated by 54 nucleotides AMB_RS22640: AMB_RS22640 - phosphate ABC transporter ATP-binding protein, at 4,884,312 to 4,885,088 _RS22640 AMB_RS22645: AMB_RS22645 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 4,885,180 to 4,885,830 _RS22645 AMB_RS22650: AMB_RS22650 - [protein-PII] uridylyltransferase, at 4,886,075 to 4,888,864 _RS22650 AMB_RS22655: AMB_RS22655 - MFS transporter, at 4,888,919 to 4,890,280 _RS22655 Position (kb) 4886 4887 4888 4889Strain fitness (log2 ratio) -3 -2 -1 0 1at 4885.116 kb on + strandat 4885.117 kb on - strandat 4885.117 kb on - strandat 4885.117 kb on - strandat 4885.117 kb on - strandat 4885.117 kb on - strandat 4885.118 kb on + strandat 4885.119 kb on - strandat 4885.189 kb on + strandat 4885.189 kb on + strandat 4885.190 kb on - strandat 4885.829 kb on - strandat 4885.839 kb on - strandat 4885.918 kb on - strandat 4885.953 kb on + strandat 4885.954 kb on - strandat 4886.034 kb on - strandat 4886.036 kb on - strandat 4888.862 kb on + strandat 4889.176 kb on - strand, within AMB_RS22655at 4889.190 kb on + strand, within AMB_RS22655at 4889.190 kb on + strand, within AMB_RS22655at 4889.190 kb on + strand, within AMB_RS22655at 4889.191 kb on - strand, within AMB_RS22655at 4889.191 kb on - strand, within AMB_RS22655at 4889.191 kb on - strand, within AMB_RS22655at 4889.191 kb on - strand, within AMB_RS22655at 4889.191 kb on - strand, within AMB_RS22655at 4889.196 kb on + strand, within AMB_RS22655at 4889.196 kb on + strand, within AMB_RS22655at 4889.196 kb on + strand, within AMB_RS22655at 4889.196 kb on + strand, within AMB_RS22655at 4889.196 kb on + strand, within AMB_RS22655at 4889.197 kb on - strand, within AMB_RS22655at 4889.197 kb on - strand, within AMB_RS22655at 4889.250 kb on + strand, within AMB_RS22655at 4889.250 kb on + strand, within AMB_RS22655at 4889.250 kb on + strand, within AMB_RS22655at 4889.251 kb on - strand, within AMB_RS22655at 4889.251 kb on - strand, within AMB_RS22655at 4889.251 kb on - strand, within AMB_RS22655at 4889.251 kb on - strand, within AMB_RS22655at 4889.251 kb on - strand, within AMB_RS22655at 4889.251 kb on - strand, within AMB_RS22655at 4889.251 kb on - strand, within AMB_RS22655at 4889.475 kb on + strand, within AMB_RS22655at 4889.475 kb on + strand, within AMB_RS22655at 4889.476 kb on - strand, within AMB_RS22655at 4889.476 kb on - strand, within AMB_RS22655at 4889.519 kb on + strand, within AMB_RS22655at 4889.522 kb on - strand, within AMB_RS22655at 4889.616 kb on + strand, within AMB_RS22655at 4889.616 kb on + strand, within AMB_RS22655at 4889.617 kb on - strand, within AMB_RS22655at 4889.766 kb on + strand, within AMB_RS22655at 4889.766 kb on + strand, within AMB_RS22655at 4889.821 kb on - strand, within AMB_RS22655

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,885,116 + -1.2
4,885,117 - -0.6
4,885,117 - -1.2
4,885,117 - +0.3
4,885,117 - -0.0
4,885,117 - +0.4
4,885,118 + -1.2
4,885,119 - -0.6
4,885,189 + -0.6
4,885,189 + -1.2
4,885,190 - -1.2
4,885,829 - +0.4
4,885,839 - -1.2
4,885,918 - -1.2
4,885,953 + -0.6
4,885,954 - +0.4
4,886,034 - -2.2
4,886,036 - -0.6
4,888,862 + -1.2
4,889,176 - AMB_RS22655 0.19 -1.0
4,889,190 + AMB_RS22655 0.20 -3.4
4,889,190 + AMB_RS22655 0.20 -2.2
4,889,190 + AMB_RS22655 0.20 -0.6
4,889,191 - AMB_RS22655 0.20 -0.6
4,889,191 - AMB_RS22655 0.20 +0.4
4,889,191 - AMB_RS22655 0.20 -0.6
4,889,191 - AMB_RS22655 0.20 +0.4
4,889,191 - AMB_RS22655 0.20 -1.2
4,889,196 + AMB_RS22655 0.20 +0.4
4,889,196 + AMB_RS22655 0.20 -2.0
4,889,196 + AMB_RS22655 0.20 -3.0
4,889,196 + AMB_RS22655 0.20 -2.2
4,889,196 + AMB_RS22655 0.20 -1.2
4,889,197 - AMB_RS22655 0.20 -0.6
4,889,197 - AMB_RS22655 0.20 +0.4
4,889,250 + AMB_RS22655 0.24 -1.2
4,889,250 + AMB_RS22655 0.24 -3.4
4,889,250 + AMB_RS22655 0.24 -1.2
4,889,251 - AMB_RS22655 0.24 -1.1
4,889,251 - AMB_RS22655 0.24 -0.6
4,889,251 - AMB_RS22655 0.24 +0.4
4,889,251 - AMB_RS22655 0.24 -1.6
4,889,251 - AMB_RS22655 0.24 -1.6
4,889,251 - AMB_RS22655 0.24 +0.4
4,889,251 - AMB_RS22655 0.24 +0.4
4,889,475 + AMB_RS22655 0.41 -2.0
4,889,475 + AMB_RS22655 0.41 +0.4
4,889,476 - AMB_RS22655 0.41 +0.1
4,889,476 - AMB_RS22655 0.41 -0.1
4,889,519 + AMB_RS22655 0.44 -2.0
4,889,522 - AMB_RS22655 0.44 +0.4
4,889,616 + AMB_RS22655 0.51 -0.6
4,889,616 + AMB_RS22655 0.51 -1.2
4,889,617 - AMB_RS22655 0.51 +1.4
4,889,766 + AMB_RS22655 0.62 -0.6
4,889,766 + AMB_RS22655 0.62 -1.6
4,889,821 - AMB_RS22655 0.66 -1.6

Or see this region's nucleotide sequence