Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22450 and AMB_RS22455 are separated by 174 nucleotides AMB_RS22455 and AMB_RS23670 overlap by 17 nucleotides
AMB_RS22450: AMB_RS22450 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 4,846,357 to 4,847,979
_RS22450
AMB_RS22455: AMB_RS22455 - uracil-DNA glycosylase, at 4,848,154 to 4,848,993
_RS22455
AMB_RS23670: AMB_RS23670 - two-component sensor histidine kinase, at 4,848,977 to 4,850,815
_RS23670
Position (kb) 4848
4849 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4847.270 kb on + strand, within AMB_RS22450 at 4847.270 kb on + strand, within AMB_RS22450 at 4847.271 kb on - strand, within AMB_RS22450 at 4847.271 kb on - strand, within AMB_RS22450 at 4847.369 kb on + strand, within AMB_RS22450 at 4847.369 kb on + strand, within AMB_RS22450 at 4847.369 kb on + strand, within AMB_RS22450 at 4847.567 kb on + strand, within AMB_RS22450 at 4847.568 kb on - strand, within AMB_RS22450 at 4847.568 kb on - strand, within AMB_RS22450 at 4847.666 kb on + strand, within AMB_RS22450 at 4847.666 kb on + strand, within AMB_RS22450 at 4847.666 kb on + strand, within AMB_RS22450 at 4847.666 kb on + strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.667 kb on - strand, within AMB_RS22450 at 4847.979 kb on + strand at 4847.989 kb on + strand at 4847.990 kb on - strand at 4847.990 kb on - strand at 4848.037 kb on + strand at 4848.038 kb on - strand at 4848.038 kb on - strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.047 kb on + strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.048 kb on - strand at 4848.049 kb on + strand at 4848.049 kb on + strand at 4848.049 kb on + strand at 4848.049 kb on + strand at 4848.049 kb on + strand at 4848.050 kb on - strand at 4848.050 kb on - strand at 4848.092 kb on + strand at 4848.092 kb on + strand at 4849.023 kb on - strand at 4849.174 kb on + strand, within AMB_RS23670 at 4849.174 kb on + strand, within AMB_RS23670 at 4849.175 kb on - strand, within AMB_RS23670 at 4849.233 kb on - strand, within AMB_RS23670 at 4849.410 kb on + strand, within AMB_RS23670 at 4849.410 kb on + strand, within AMB_RS23670 at 4849.410 kb on + strand, within AMB_RS23670 at 4849.410 kb on + strand, within AMB_RS23670 at 4849.410 kb on + strand, within AMB_RS23670 at 4849.411 kb on - strand, within AMB_RS23670 at 4849.411 kb on - strand, within AMB_RS23670 at 4849.411 kb on - strand, within AMB_RS23670 at 4849.739 kb on + strand, within AMB_RS23670 at 4849.740 kb on - strand, within AMB_RS23670 at 4849.740 kb on - strand, within AMB_RS23670 at 4849.740 kb on - strand, within AMB_RS23670 at 4849.742 kb on - strand, within AMB_RS23670 at 4849.871 kb on + strand, within AMB_RS23670
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,847,270 + AMB_RS22450 0.56 -0.6 4,847,270 + AMB_RS22450 0.56 +0.4 4,847,271 - AMB_RS22450 0.56 -3.9 4,847,271 - AMB_RS22450 0.56 -2.0 4,847,369 + AMB_RS22450 0.62 +0.4 4,847,369 + AMB_RS22450 0.62 +0.4 4,847,369 + AMB_RS22450 0.62 +0.4 4,847,567 + AMB_RS22450 0.75 -3.7 4,847,568 - AMB_RS22450 0.75 -5.1 4,847,568 - AMB_RS22450 0.75 +0.4 4,847,666 + AMB_RS22450 0.81 -1.6 4,847,666 + AMB_RS22450 0.81 -2.6 4,847,666 + AMB_RS22450 0.81 -2.0 4,847,666 + AMB_RS22450 0.81 -2.0 4,847,667 - AMB_RS22450 0.81 -0.6 4,847,667 - AMB_RS22450 0.81 -2.6 4,847,667 - AMB_RS22450 0.81 +0.4 4,847,667 - AMB_RS22450 0.81 +0.4 4,847,667 - AMB_RS22450 0.81 -1.2 4,847,667 - AMB_RS22450 0.81 -1.2 4,847,979 + +0.4 4,847,989 + -0.6 4,847,990 - +1.4 4,847,990 - -1.2 4,848,037 + -2.6 4,848,038 - +0.4 4,848,038 - -1.2 4,848,047 + -1.2 4,848,047 + +0.4 4,848,047 + -1.2 4,848,047 + -1.2 4,848,047 + -1.6 4,848,047 + -0.3 4,848,048 - +0.4 4,848,048 - +0.4 4,848,048 - -2.2 4,848,048 - +0.4 4,848,048 - +0.4 4,848,048 - -1.6 4,848,049 + -1.6 4,848,049 + +0.4 4,848,049 + -1.6 4,848,049 + -0.2 4,848,049 + -0.3 4,848,050 - -0.6 4,848,050 - +0.4 4,848,092 + -2.2 4,848,092 + +0.4 4,849,023 - +0.4 4,849,174 + AMB_RS23670 0.11 -1.2 4,849,174 + AMB_RS23670 0.11 +0.4 4,849,175 - AMB_RS23670 0.11 -1.2 4,849,233 - AMB_RS23670 0.14 -1.2 4,849,410 + AMB_RS23670 0.24 -2.2 4,849,410 + AMB_RS23670 0.24 +0.4 4,849,410 + AMB_RS23670 0.24 -0.6 4,849,410 + AMB_RS23670 0.24 -0.3 4,849,410 + AMB_RS23670 0.24 -0.6 4,849,411 - AMB_RS23670 0.24 +0.3 4,849,411 - AMB_RS23670 0.24 -1.2 4,849,411 - AMB_RS23670 0.24 -0.6 4,849,739 + AMB_RS23670 0.41 -1.6 4,849,740 - AMB_RS23670 0.41 -1.6 4,849,740 - AMB_RS23670 0.41 +0.4 4,849,740 - AMB_RS23670 0.41 -0.6 4,849,742 - AMB_RS23670 0.42 -1.6 4,849,871 + AMB_RS23670 0.49 -2.0
Or see this region's nucleotide sequence