Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22415 and AMB_RS22420 are separated by 25 nucleotides AMB_RS22420 and AMB_RS22425 overlap by 4 nucleotides
AMB_RS22415: AMB_RS22415 - hypothetical protein, at 4,839,025 to 4,840,026
_RS22415
AMB_RS22420: AMB_RS22420 - hypothetical protein, at 4,840,052 to 4,840,678
_RS22420
AMB_RS22425: AMB_RS22425 - hypothetical protein, at 4,840,675 to 4,841,697
_RS22425
Position (kb) 4840
4841 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4839.094 kb on + strand at 4839.094 kb on + strand at 4839.094 kb on + strand at 4839.094 kb on + strand at 4839.095 kb on - strand at 4839.152 kb on - strand, within AMB_RS22415 at 4839.227 kb on + strand, within AMB_RS22415 at 4839.227 kb on + strand, within AMB_RS22415 at 4839.227 kb on + strand, within AMB_RS22415 at 4839.227 kb on + strand, within AMB_RS22415 at 4839.228 kb on - strand, within AMB_RS22415 at 4839.228 kb on - strand, within AMB_RS22415 at 4839.228 kb on - strand, within AMB_RS22415 at 4839.228 kb on - strand, within AMB_RS22415 at 4839.228 kb on - strand, within AMB_RS22415 at 4839.267 kb on + strand, within AMB_RS22415 at 4839.268 kb on - strand, within AMB_RS22415 at 4839.313 kb on + strand, within AMB_RS22415 at 4839.313 kb on + strand, within AMB_RS22415 at 4839.314 kb on - strand, within AMB_RS22415 at 4839.314 kb on - strand, within AMB_RS22415 at 4839.492 kb on + strand, within AMB_RS22415 at 4839.712 kb on + strand, within AMB_RS22415 at 4839.712 kb on + strand, within AMB_RS22415 at 4839.712 kb on + strand, within AMB_RS22415 at 4839.713 kb on - strand, within AMB_RS22415 at 4839.713 kb on - strand, within AMB_RS22415 at 4839.758 kb on + strand, within AMB_RS22415 at 4839.758 kb on + strand, within AMB_RS22415 at 4839.817 kb on - strand, within AMB_RS22415 at 4839.906 kb on + strand, within AMB_RS22415 at 4839.906 kb on + strand, within AMB_RS22415 at 4839.906 kb on + strand, within AMB_RS22415 at 4839.907 kb on - strand, within AMB_RS22415 at 4839.927 kb on + strand at 4840.025 kb on - strand at 4840.033 kb on + strand at 4840.033 kb on + strand at 4840.033 kb on + strand at 4840.033 kb on + strand at 4840.034 kb on - strand at 4840.034 kb on - strand at 4840.034 kb on - strand at 4840.034 kb on - strand at 4840.095 kb on + strand at 4840.095 kb on + strand at 4840.232 kb on + strand, within AMB_RS22420 at 4840.396 kb on - strand, within AMB_RS22420 at 4840.502 kb on + strand, within AMB_RS22420 at 4840.503 kb on - strand, within AMB_RS22420 at 4840.543 kb on + strand, within AMB_RS22420
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,839,094 + -3.7 4,839,094 + -2.8 4,839,094 + -1.2 4,839,094 + +0.4 4,839,095 - -0.6 4,839,152 - AMB_RS22415 0.13 +0.4 4,839,227 + AMB_RS22415 0.20 +0.4 4,839,227 + AMB_RS22415 0.20 -2.0 4,839,227 + AMB_RS22415 0.20 +0.4 4,839,227 + AMB_RS22415 0.20 -1.2 4,839,228 - AMB_RS22415 0.20 -0.1 4,839,228 - AMB_RS22415 0.20 -0.2 4,839,228 - AMB_RS22415 0.20 -0.6 4,839,228 - AMB_RS22415 0.20 +0.4 4,839,228 - AMB_RS22415 0.20 -1.4 4,839,267 + AMB_RS22415 0.24 +0.4 4,839,268 - AMB_RS22415 0.24 -1.2 4,839,313 + AMB_RS22415 0.29 -0.6 4,839,313 + AMB_RS22415 0.29 -0.6 4,839,314 - AMB_RS22415 0.29 +0.4 4,839,314 - AMB_RS22415 0.29 +0.4 4,839,492 + AMB_RS22415 0.47 -1.6 4,839,712 + AMB_RS22415 0.69 -0.6 4,839,712 + AMB_RS22415 0.69 +0.2 4,839,712 + AMB_RS22415 0.69 +1.4 4,839,713 - AMB_RS22415 0.69 -2.6 4,839,713 - AMB_RS22415 0.69 -3.0 4,839,758 + AMB_RS22415 0.73 -1.2 4,839,758 + AMB_RS22415 0.73 -0.3 4,839,817 - AMB_RS22415 0.79 -0.6 4,839,906 + AMB_RS22415 0.88 +0.3 4,839,906 + AMB_RS22415 0.88 +0.4 4,839,906 + AMB_RS22415 0.88 +0.4 4,839,907 - AMB_RS22415 0.88 +1.4 4,839,927 + -0.2 4,840,025 - -2.0 4,840,033 + -0.4 4,840,033 + -0.6 4,840,033 + -1.6 4,840,033 + -1.6 4,840,034 - -0.6 4,840,034 - +0.3 4,840,034 - -1.2 4,840,034 - -1.2 4,840,095 + -0.6 4,840,095 + -0.6 4,840,232 + AMB_RS22420 0.29 -3.3 4,840,396 - AMB_RS22420 0.55 -2.0 4,840,502 + AMB_RS22420 0.72 -0.6 4,840,503 - AMB_RS22420 0.72 +0.3 4,840,543 + AMB_RS22420 0.78 -0.3
Or see this region's nucleotide sequence