Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22395 and AMB_RS22400 are separated by 252 nucleotides AMB_RS22400 and AMB_RS22405 are separated by 8 nucleotides AMB_RS22405 and AMB_RS22410 are separated by 61 nucleotides AMB_RS22410 and AMB_RS22415 are separated by 130 nucleotides
AMB_RS22395: AMB_RS22395 - cobaltochelatase subunit CobN, at 4,833,087 to 4,836,791
_RS22395
AMB_RS22400: AMB_RS22400 - transposase, at 4,837,044 to 4,837,337
_RS22400
AMB_RS22405: AMB_RS22405 - IS3 family transposase, at 4,837,346 to 4,838,191
_RS22405
AMB_RS22410: AMB_RS22410 - hypothetical protein, at 4,838,253 to 4,838,894
_RS22410
AMB_RS22415: AMB_RS22415 - hypothetical protein, at 4,839,025 to 4,840,026
_RS22415
Position (kb) 4837
4838
4839 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4836.907 kb on + strand at 4836.907 kb on + strand at 4836.907 kb on + strand at 4836.908 kb on - strand at 4836.939 kb on - strand at 4836.939 kb on - strand at 4836.970 kb on - strand at 4838.189 kb on + strand at 4838.224 kb on + strand at 4838.239 kb on + strand at 4838.267 kb on + strand at 4838.268 kb on - strand at 4838.268 kb on - strand at 4838.313 kb on + strand at 4838.314 kb on - strand at 4838.383 kb on + strand, within AMB_RS22410 at 4838.383 kb on + strand, within AMB_RS22410 at 4838.383 kb on + strand, within AMB_RS22410 at 4838.384 kb on - strand, within AMB_RS22410 at 4838.384 kb on - strand, within AMB_RS22410 at 4838.408 kb on - strand, within AMB_RS22410 at 4838.408 kb on - strand, within AMB_RS22410 at 4838.408 kb on - strand, within AMB_RS22410 at 4838.436 kb on + strand, within AMB_RS22410 at 4838.436 kb on + strand, within AMB_RS22410 at 4838.436 kb on + strand, within AMB_RS22410 at 4838.437 kb on - strand, within AMB_RS22410 at 4838.437 kb on - strand, within AMB_RS22410 at 4838.437 kb on - strand, within AMB_RS22410 at 4838.437 kb on - strand, within AMB_RS22410 at 4838.504 kb on + strand, within AMB_RS22410 at 4838.504 kb on + strand, within AMB_RS22410 at 4838.505 kb on - strand, within AMB_RS22410 at 4838.505 kb on - strand, within AMB_RS22410 at 4838.505 kb on - strand, within AMB_RS22410 at 4838.596 kb on + strand, within AMB_RS22410 at 4838.664 kb on + strand, within AMB_RS22410 at 4838.664 kb on + strand, within AMB_RS22410 at 4838.665 kb on - strand, within AMB_RS22410 at 4838.681 kb on + strand, within AMB_RS22410 at 4838.716 kb on - strand, within AMB_RS22410 at 4838.801 kb on - strand, within AMB_RS22410 at 4838.940 kb on + strand at 4838.940 kb on + strand at 4838.972 kb on - strand at 4838.973 kb on + strand at 4838.974 kb on - strand at 4838.974 kb on - strand at 4838.976 kb on - strand at 4838.976 kb on - strand at 4838.976 kb on - strand at 4838.977 kb on + strand at 4838.977 kb on + strand at 4838.977 kb on + strand at 4838.977 kb on + strand at 4838.977 kb on + strand at 4838.977 kb on + strand at 4838.978 kb on - strand at 4838.978 kb on - strand at 4838.978 kb on - strand at 4838.978 kb on - strand at 4838.978 kb on - strand at 4839.020 kb on - strand at 4839.024 kb on + strand at 4839.024 kb on + strand at 4839.024 kb on + strand at 4839.024 kb on + strand at 4839.024 kb on + strand at 4839.025 kb on - strand at 4839.025 kb on - strand at 4839.025 kb on - strand at 4839.025 kb on - strand at 4839.025 kb on - strand at 4839.094 kb on + strand at 4839.094 kb on + strand at 4839.094 kb on + strand at 4839.094 kb on + strand at 4839.095 kb on - strand at 4839.152 kb on - strand, within AMB_RS22415
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,836,907 + -0.3 4,836,907 + -2.2 4,836,907 + +0.4 4,836,908 - +0.4 4,836,939 - -2.2 4,836,939 - -1.8 4,836,970 - -1.2 4,838,189 + -2.0 4,838,224 + +0.2 4,838,239 + -2.4 4,838,267 + -1.6 4,838,268 - +0.4 4,838,268 - +0.4 4,838,313 + +1.4 4,838,314 - +0.4 4,838,383 + AMB_RS22410 0.20 +0.4 4,838,383 + AMB_RS22410 0.20 +0.4 4,838,383 + AMB_RS22410 0.20 -1.6 4,838,384 - AMB_RS22410 0.20 +0.4 4,838,384 - AMB_RS22410 0.20 +0.3 4,838,408 - AMB_RS22410 0.24 -2.0 4,838,408 - AMB_RS22410 0.24 -2.2 4,838,408 - AMB_RS22410 0.24 +0.4 4,838,436 + AMB_RS22410 0.29 -0.2 4,838,436 + AMB_RS22410 0.29 -1.2 4,838,436 + AMB_RS22410 0.29 +0.4 4,838,437 - AMB_RS22410 0.29 -1.2 4,838,437 - AMB_RS22410 0.29 +0.4 4,838,437 - AMB_RS22410 0.29 -4.4 4,838,437 - AMB_RS22410 0.29 -0.6 4,838,504 + AMB_RS22410 0.39 +0.4 4,838,504 + AMB_RS22410 0.39 +0.4 4,838,505 - AMB_RS22410 0.39 +0.4 4,838,505 - AMB_RS22410 0.39 -1.2 4,838,505 - AMB_RS22410 0.39 -0.4 4,838,596 + AMB_RS22410 0.53 +0.1 4,838,664 + AMB_RS22410 0.64 +0.4 4,838,664 + AMB_RS22410 0.64 -2.4 4,838,665 - AMB_RS22410 0.64 -1.2 4,838,681 + AMB_RS22410 0.67 +0.1 4,838,716 - AMB_RS22410 0.72 -0.6 4,838,801 - AMB_RS22410 0.85 -1.6 4,838,940 + -0.6 4,838,940 + -0.6 4,838,972 - -1.2 4,838,973 + -2.4 4,838,974 - -1.2 4,838,974 - -1.6 4,838,976 - -1.2 4,838,976 - -0.1 4,838,976 - +0.4 4,838,977 + -0.1 4,838,977 + +0.4 4,838,977 + +0.4 4,838,977 + -1.6 4,838,977 + -0.6 4,838,977 + -2.0 4,838,978 - -2.0 4,838,978 - +0.4 4,838,978 - -3.2 4,838,978 - -1.0 4,838,978 - +0.4 4,839,020 - -1.2 4,839,024 + -3.2 4,839,024 + -3.0 4,839,024 + -2.3 4,839,024 + -0.2 4,839,024 + +0.3 4,839,025 - -2.0 4,839,025 - -0.6 4,839,025 - -0.5 4,839,025 - +0.1 4,839,025 - +0.4 4,839,094 + -3.7 4,839,094 + -2.8 4,839,094 + -1.2 4,839,094 + +0.4 4,839,095 - -0.6 4,839,152 - AMB_RS22415 0.13 +0.4
Or see this region's nucleotide sequence