Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22370

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22360 and AMB_RS22365 are separated by 3 nucleotidesAMB_RS22365 and AMB_RS22370 overlap by 4 nucleotidesAMB_RS22370 and AMB_RS22375 overlap by 4 nucleotides AMB_RS22360: AMB_RS22360 - hydroxymethylbilane synthase, at 4,826,969 to 4,827,916 _RS22360 AMB_RS22365: AMB_RS22365 - uroporphyrinogen-III synthase, at 4,827,920 to 4,828,648 _RS22365 AMB_RS22370: AMB_RS22370 - hypothetical protein, at 4,828,645 to 4,829,661 _RS22370 AMB_RS22375: AMB_RS22375 - hypothetical protein, at 4,829,658 to 4,830,938 _RS22375 Position (kb) 4828 4829 4830Strain fitness (log2 ratio) -1 0 1at 4829.910 kb on + strand, within AMB_RS22375at 4829.910 kb on + strand, within AMB_RS22375

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,829,910 + AMB_RS22375 0.20 -1.2
4,829,910 + AMB_RS22375 0.20 -0.8

Or see this region's nucleotide sequence