Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22325 and AMB_RS22330 are separated by 45 nucleotides AMB_RS22330 and AMB_RS23665 are separated by 130 nucleotides
AMB_RS22325: AMB_RS22325 - 4Fe-4S binding domain-containing protein, at 4,818,001 to 4,819,365
_RS22325
AMB_RS22330: AMB_RS22330 - glucose-6-phosphate isomerase, at 4,819,411 to 4,821,051
_RS22330
AMB_RS23665: AMB_RS23665 - GGDEF domain-containing protein, at 4,821,182 to 4,822,918
_RS23665
Position (kb) 4819
4820
4821
4822 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4818.478 kb on + strand, within AMB_RS22325 at 4818.479 kb on - strand, within AMB_RS22325 at 4818.508 kb on + strand, within AMB_RS22325 at 4818.994 kb on + strand, within AMB_RS22325 at 4818.994 kb on + strand, within AMB_RS22325 at 4818.994 kb on + strand, within AMB_RS22325 at 4818.994 kb on + strand, within AMB_RS22325 at 4818.995 kb on - strand, within AMB_RS22325 at 4818.995 kb on - strand, within AMB_RS22325 at 4818.995 kb on - strand, within AMB_RS22325 at 4818.995 kb on - strand, within AMB_RS22325 at 4818.995 kb on - strand, within AMB_RS22325 at 4818.995 kb on - strand, within AMB_RS22325 at 4818.995 kb on - strand, within AMB_RS22325 at 4818.995 kb on - strand, within AMB_RS22325 at 4818.996 kb on + strand, within AMB_RS22325 at 4818.997 kb on - strand, within AMB_RS22325 at 4819.097 kb on - strand, within AMB_RS22325 at 4819.363 kb on + strand at 4819.363 kb on + strand at 4819.368 kb on + strand at 4819.368 kb on + strand at 4819.368 kb on + strand at 4819.370 kb on + strand at 4821.129 kb on + strand at 4821.129 kb on + strand at 4821.130 kb on - strand at 4821.131 kb on + strand at 4821.131 kb on + strand at 4821.680 kb on + strand, within AMB_RS23665 at 4821.680 kb on + strand, within AMB_RS23665 at 4821.680 kb on + strand, within AMB_RS23665 at 4821.681 kb on - strand, within AMB_RS23665 at 4821.682 kb on + strand, within AMB_RS23665 at 4821.682 kb on + strand, within AMB_RS23665 at 4821.683 kb on - strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.914 kb on + strand, within AMB_RS23665 at 4821.915 kb on - strand, within AMB_RS23665 at 4821.915 kb on - strand, within AMB_RS23665 at 4821.915 kb on - strand, within AMB_RS23665 at 4821.915 kb on - strand, within AMB_RS23665 at 4821.973 kb on + strand, within AMB_RS23665 at 4821.973 kb on + strand, within AMB_RS23665 at 4821.974 kb on - strand, within AMB_RS23665
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,818,478 + AMB_RS22325 0.35 -2.6 4,818,479 - AMB_RS22325 0.35 -0.4 4,818,508 + AMB_RS22325 0.37 -1.2 4,818,994 + AMB_RS22325 0.73 -1.6 4,818,994 + AMB_RS22325 0.73 -2.4 4,818,994 + AMB_RS22325 0.73 -1.6 4,818,994 + AMB_RS22325 0.73 -2.6 4,818,995 - AMB_RS22325 0.73 -0.6 4,818,995 - AMB_RS22325 0.73 -0.3 4,818,995 - AMB_RS22325 0.73 -0.6 4,818,995 - AMB_RS22325 0.73 +0.4 4,818,995 - AMB_RS22325 0.73 -0.6 4,818,995 - AMB_RS22325 0.73 -2.2 4,818,995 - AMB_RS22325 0.73 -1.6 4,818,995 - AMB_RS22325 0.73 +0.4 4,818,996 + AMB_RS22325 0.73 -0.6 4,818,997 - AMB_RS22325 0.73 -1.6 4,819,097 - AMB_RS22325 0.80 +0.4 4,819,363 + +0.4 4,819,363 + -1.2 4,819,368 + -2.2 4,819,368 + -0.6 4,819,368 + -1.0 4,819,370 + +0.0 4,821,129 + +0.1 4,821,129 + -0.6 4,821,130 - -0.6 4,821,131 + +0.4 4,821,131 + -1.6 4,821,680 + AMB_RS23665 0.29 -1.2 4,821,680 + AMB_RS23665 0.29 -0.6 4,821,680 + AMB_RS23665 0.29 +0.4 4,821,681 - AMB_RS23665 0.29 -0.1 4,821,682 + AMB_RS23665 0.29 -0.6 4,821,682 + AMB_RS23665 0.29 -1.2 4,821,683 - AMB_RS23665 0.29 +0.4 4,821,914 + AMB_RS23665 0.42 -1.6 4,821,914 + AMB_RS23665 0.42 -2.0 4,821,914 + AMB_RS23665 0.42 -0.1 4,821,914 + AMB_RS23665 0.42 -4.2 4,821,914 + AMB_RS23665 0.42 -0.6 4,821,914 + AMB_RS23665 0.42 +0.2 4,821,915 - AMB_RS23665 0.42 -1.6 4,821,915 - AMB_RS23665 0.42 -0.0 4,821,915 - AMB_RS23665 0.42 +0.4 4,821,915 - AMB_RS23665 0.42 -1.2 4,821,973 + AMB_RS23665 0.46 -4.5 4,821,973 + AMB_RS23665 0.46 -2.2 4,821,974 - AMB_RS23665 0.46 -3.0
Or see this region's nucleotide sequence