Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21835 and AMB_RS21840 are separated by 2 nucleotides AMB_RS21840 and AMB_RS21845 are separated by 55 nucleotides AMB_RS21845 and AMB_RS21850 are separated by 335 nucleotides AMB_RS21850 and AMB_RS21855 are separated by 133 nucleotides
AMB_RS21835: AMB_RS21835 - DUF4197 domain-containing protein, at 4,721,553 to 4,722,332
_RS21835
AMB_RS21840: AMB_RS21840 - hypothetical protein, at 4,722,335 to 4,723,168
_RS21840
AMB_RS21845: AMB_RS21845 - CarD family transcriptional regulator, at 4,723,224 to 4,723,718
_RS21845
AMB_RS21850: AMB_RS21850 - ferredoxin family protein, at 4,724,054 to 4,724,383
_RS21850
AMB_RS21855: AMB_RS21855 - TerC family protein, at 4,724,517 to 4,725,293
_RS21855
Position (kb) 4723
4724 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4722.356 kb on + strand at 4722.356 kb on + strand at 4722.356 kb on + strand at 4722.498 kb on + strand, within AMB_RS21840 at 4722.605 kb on - strand, within AMB_RS21840 at 4722.605 kb on - strand, within AMB_RS21840 at 4722.605 kb on - strand, within AMB_RS21840 at 4722.605 kb on - strand, within AMB_RS21840 at 4722.663 kb on + strand, within AMB_RS21840 at 4722.664 kb on - strand, within AMB_RS21840 at 4722.664 kb on - strand, within AMB_RS21840 at 4722.667 kb on + strand, within AMB_RS21840 at 4722.667 kb on + strand, within AMB_RS21840 at 4722.667 kb on + strand, within AMB_RS21840 at 4722.667 kb on + strand, within AMB_RS21840 at 4722.667 kb on + strand, within AMB_RS21840 at 4722.668 kb on - strand, within AMB_RS21840 at 4722.759 kb on + strand, within AMB_RS21840 at 4722.879 kb on + strand, within AMB_RS21840 at 4722.880 kb on - strand, within AMB_RS21840 at 4722.880 kb on - strand, within AMB_RS21840 at 4722.880 kb on - strand, within AMB_RS21840 at 4722.981 kb on + strand, within AMB_RS21840 at 4722.993 kb on + strand, within AMB_RS21840 at 4722.993 kb on + strand, within AMB_RS21840 at 4722.994 kb on - strand, within AMB_RS21840 at 4723.880 kb on - strand at 4723.880 kb on - strand at 4723.880 kb on - strand at 4723.917 kb on - strand at 4724.034 kb on - strand at 4724.038 kb on + strand at 4724.039 kb on - strand at 4724.039 kb on - strand at 4724.039 kb on - strand at 4724.039 kb on - strand at 4724.039 kb on - strand at 4724.039 kb on - strand at 4724.039 kb on - strand at 4724.039 kb on - strand at 4724.397 kb on - strand at 4724.397 kb on - strand at 4724.397 kb on - strand at 4724.519 kb on - strand at 4724.615 kb on - strand, within AMB_RS21855 at 4724.615 kb on - strand, within AMB_RS21855 at 4724.615 kb on - strand, within AMB_RS21855 at 4724.615 kb on - strand, within AMB_RS21855 at 4724.615 kb on - strand, within AMB_RS21855 at 4724.615 kb on - strand, within AMB_RS21855 at 4724.620 kb on + strand, within AMB_RS21855 at 4724.621 kb on - strand, within AMB_RS21855
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,722,356 + -0.6 4,722,356 + +0.4 4,722,356 + -0.6 4,722,498 + AMB_RS21840 0.20 -0.6 4,722,605 - AMB_RS21840 0.32 -0.6 4,722,605 - AMB_RS21840 0.32 +0.4 4,722,605 - AMB_RS21840 0.32 +0.4 4,722,605 - AMB_RS21840 0.32 -3.0 4,722,663 + AMB_RS21840 0.39 -2.6 4,722,664 - AMB_RS21840 0.39 -1.2 4,722,664 - AMB_RS21840 0.39 -2.7 4,722,667 + AMB_RS21840 0.40 -1.6 4,722,667 + AMB_RS21840 0.40 -0.0 4,722,667 + AMB_RS21840 0.40 -2.6 4,722,667 + AMB_RS21840 0.40 -3.4 4,722,667 + AMB_RS21840 0.40 -2.6 4,722,668 - AMB_RS21840 0.40 -2.5 4,722,759 + AMB_RS21840 0.51 -0.1 4,722,879 + AMB_RS21840 0.65 -0.6 4,722,880 - AMB_RS21840 0.65 -1.2 4,722,880 - AMB_RS21840 0.65 -0.6 4,722,880 - AMB_RS21840 0.65 +0.4 4,722,981 + AMB_RS21840 0.77 +0.4 4,722,993 + AMB_RS21840 0.79 -0.2 4,722,993 + AMB_RS21840 0.79 -2.0 4,722,994 - AMB_RS21840 0.79 -2.2 4,723,880 - -0.6 4,723,880 - -0.6 4,723,880 - -5.0 4,723,917 - +0.4 4,724,034 - -0.6 4,724,038 + -1.2 4,724,039 - +0.4 4,724,039 - +0.2 4,724,039 - +0.4 4,724,039 - -1.6 4,724,039 - -0.2 4,724,039 - -0.0 4,724,039 - -1.2 4,724,039 - -1.2 4,724,397 - -0.9 4,724,397 - -0.6 4,724,397 - -2.5 4,724,519 - +0.4 4,724,615 - AMB_RS21855 0.13 -0.6 4,724,615 - AMB_RS21855 0.13 +0.4 4,724,615 - AMB_RS21855 0.13 +0.4 4,724,615 - AMB_RS21855 0.13 -1.6 4,724,615 - AMB_RS21855 0.13 -1.6 4,724,615 - AMB_RS21855 0.13 +0.4 4,724,620 + AMB_RS21855 0.13 -2.0 4,724,621 - AMB_RS21855 0.13 -1.2
Or see this region's nucleotide sequence