Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21365

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21355 and AMB_RS21360 are separated by 68 nucleotidesAMB_RS21360 and AMB_RS21365 are separated by 82 nucleotidesAMB_RS21365 and AMB_RS21370 are separated by 303 nucleotides AMB_RS21355: AMB_RS21355 - GTP cyclohydrolase I FolE, at 4,633,732 to 4,634,391 _RS21355 AMB_RS21360: AMB_RS21360 - Co2+/Mg2+ efflux protein ApaG, at 4,634,460 to 4,634,852 _RS21360 AMB_RS21365: AMB_RS21365 - O-succinylhomoserine sulfhydrylase, at 4,634,935 to 4,636,146 _RS21365 AMB_RS21370: AMB_RS21370 - enoyl-[acyl-carrier-protein] reductase FabI, at 4,636,450 to 4,637,253 _RS21370 Position (kb) 4634 4635 4636 4637Strain fitness (log2 ratio) -3 -2 -1 0 1at 4634.450 kb on - strandat 4634.462 kb on - strandat 4634.551 kb on + strand, within AMB_RS21360at 4634.551 kb on + strand, within AMB_RS21360at 4634.552 kb on - strand, within AMB_RS21360at 4634.552 kb on - strand, within AMB_RS21360at 4634.552 kb on - strand, within AMB_RS21360at 4634.600 kb on + strand, within AMB_RS21360at 4634.600 kb on + strand, within AMB_RS21360at 4634.600 kb on + strand, within AMB_RS21360at 4634.600 kb on + strand, within AMB_RS21360at 4634.600 kb on + strand, within AMB_RS21360at 4634.601 kb on - strand, within AMB_RS21360at 4634.601 kb on - strand, within AMB_RS21360at 4634.601 kb on - strand, within AMB_RS21360at 4634.601 kb on - strand, within AMB_RS21360at 4634.601 kb on - strand, within AMB_RS21360at 4634.602 kb on + strand, within AMB_RS21360at 4634.602 kb on + strand, within AMB_RS21360at 4634.602 kb on + strand, within AMB_RS21360at 4634.602 kb on + strand, within AMB_RS21360at 4634.602 kb on + strand, within AMB_RS21360at 4634.602 kb on + strand, within AMB_RS21360at 4634.602 kb on + strand, within AMB_RS21360at 4634.603 kb on - strand, within AMB_RS21360at 4634.603 kb on - strand, within AMB_RS21360at 4634.603 kb on - strand, within AMB_RS21360at 4634.603 kb on - strand, within AMB_RS21360at 4634.603 kb on - strand, within AMB_RS21360at 4634.603 kb on - strand, within AMB_RS21360at 4634.608 kb on + strand, within AMB_RS21360at 4634.608 kb on + strand, within AMB_RS21360at 4634.609 kb on - strand, within AMB_RS21360at 4634.609 kb on - strand, within AMB_RS21360at 4634.609 kb on - strand, within AMB_RS21360at 4634.803 kb on + strand, within AMB_RS21360at 4634.803 kb on + strand, within AMB_RS21360at 4634.804 kb on - strand, within AMB_RS21360at 4634.804 kb on - strand, within AMB_RS21360at 4634.804 kb on - strand, within AMB_RS21360at 4634.848 kb on + strandat 4634.848 kb on + strandat 4634.848 kb on + strandat 4634.848 kb on + strandat 4634.849 kb on - strandat 4634.849 kb on - strandat 4634.849 kb on - strandat 4634.849 kb on - strandat 4634.889 kb on + strandat 4634.889 kb on + strandat 4634.889 kb on + strandat 4634.889 kb on + strandat 4634.889 kb on + strandat 4634.890 kb on - strandat 4634.890 kb on - strandat 4634.890 kb on - strandat 4634.890 kb on - strandat 4634.890 kb on - strandat 4634.890 kb on - strandat 4634.890 kb on - strandat 4634.936 kb on + strandat 4634.937 kb on - strandat 4634.937 kb on - strandat 4636.233 kb on - strandat 4636.380 kb on - strandat 4636.392 kb on + strandat 4636.392 kb on + strandat 4636.431 kb on + strandat 4636.431 kb on + strandat 4636.431 kb on + strandat 4636.432 kb on - strandat 4636.432 kb on - strandat 4636.553 kb on - strand, within AMB_RS21370at 4636.604 kb on - strand, within AMB_RS21370at 4636.627 kb on + strand, within AMB_RS21370at 4636.627 kb on + strand, within AMB_RS21370at 4636.628 kb on - strand, within AMB_RS21370at 4636.666 kb on + strand, within AMB_RS21370at 4636.666 kb on + strand, within AMB_RS21370at 4636.666 kb on + strand, within AMB_RS21370at 4636.666 kb on + strand, within AMB_RS21370at 4636.666 kb on + strand, within AMB_RS21370at 4636.667 kb on - strand, within AMB_RS21370at 4636.667 kb on - strand, within AMB_RS21370at 4636.769 kb on - strand, within AMB_RS21370at 4636.769 kb on - strand, within AMB_RS21370at 4636.924 kb on + strand, within AMB_RS21370at 4636.951 kb on + strand, within AMB_RS21370at 4636.951 kb on + strand, within AMB_RS21370at 4636.951 kb on + strand, within AMB_RS21370at 4636.952 kb on - strand, within AMB_RS21370at 4636.952 kb on - strand, within AMB_RS21370at 4636.999 kb on + strand, within AMB_RS21370at 4636.999 kb on + strand, within AMB_RS21370at 4637.000 kb on - strand, within AMB_RS21370at 4637.000 kb on - strand, within AMB_RS21370at 4637.000 kb on - strand, within AMB_RS21370

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,634,450 - -0.1
4,634,462 - -0.6
4,634,551 + AMB_RS21360 0.23 +0.4
4,634,551 + AMB_RS21360 0.23 -1.2
4,634,552 - AMB_RS21360 0.23 -0.6
4,634,552 - AMB_RS21360 0.23 +0.0
4,634,552 - AMB_RS21360 0.23 -0.6
4,634,600 + AMB_RS21360 0.36 +0.8
4,634,600 + AMB_RS21360 0.36 -2.6
4,634,600 + AMB_RS21360 0.36 +0.4
4,634,600 + AMB_RS21360 0.36 -2.8
4,634,600 + AMB_RS21360 0.36 +0.4
4,634,601 - AMB_RS21360 0.36 -0.6
4,634,601 - AMB_RS21360 0.36 +0.4
4,634,601 - AMB_RS21360 0.36 -0.2
4,634,601 - AMB_RS21360 0.36 -1.2
4,634,601 - AMB_RS21360 0.36 -2.4
4,634,602 + AMB_RS21360 0.36 -0.1
4,634,602 + AMB_RS21360 0.36 -2.0
4,634,602 + AMB_RS21360 0.36 -2.8
4,634,602 + AMB_RS21360 0.36 -2.0
4,634,602 + AMB_RS21360 0.36 -1.6
4,634,602 + AMB_RS21360 0.36 +0.4
4,634,602 + AMB_RS21360 0.36 -2.2
4,634,603 - AMB_RS21360 0.36 -1.6
4,634,603 - AMB_RS21360 0.36 -1.2
4,634,603 - AMB_RS21360 0.36 +0.4
4,634,603 - AMB_RS21360 0.36 -0.6
4,634,603 - AMB_RS21360 0.36 -0.3
4,634,603 - AMB_RS21360 0.36 -0.6
4,634,608 + AMB_RS21360 0.38 -0.6
4,634,608 + AMB_RS21360 0.38 -1.0
4,634,609 - AMB_RS21360 0.38 -0.8
4,634,609 - AMB_RS21360 0.38 +0.4
4,634,609 - AMB_RS21360 0.38 -1.0
4,634,803 + AMB_RS21360 0.87 -0.8
4,634,803 + AMB_RS21360 0.87 +0.4
4,634,804 - AMB_RS21360 0.88 -1.2
4,634,804 - AMB_RS21360 0.88 +0.4
4,634,804 - AMB_RS21360 0.88 -1.2
4,634,848 + +1.4
4,634,848 + -1.6
4,634,848 + -0.9
4,634,848 + -1.4
4,634,849 - -0.8
4,634,849 - -2.0
4,634,849 - -2.0
4,634,849 - -0.6
4,634,889 + -3.4
4,634,889 + -0.6
4,634,889 + +0.4
4,634,889 + -2.6
4,634,889 + -1.2
4,634,890 - -0.6
4,634,890 - +0.4
4,634,890 - +0.4
4,634,890 - -2.8
4,634,890 - -3.2
4,634,890 - -1.2
4,634,890 - -0.2
4,634,936 + -1.6
4,634,937 - -2.0
4,634,937 - -0.6
4,636,233 - -0.6
4,636,380 - +0.4
4,636,392 + -2.0
4,636,392 + -0.2
4,636,431 + +0.4
4,636,431 + -1.2
4,636,431 + +0.4
4,636,432 - +0.7
4,636,432 - -0.0
4,636,553 - AMB_RS21370 0.13 +0.4
4,636,604 - AMB_RS21370 0.19 -0.6
4,636,627 + AMB_RS21370 0.22 -0.3
4,636,627 + AMB_RS21370 0.22 +0.1
4,636,628 - AMB_RS21370 0.22 -1.6
4,636,666 + AMB_RS21370 0.27 -1.2
4,636,666 + AMB_RS21370 0.27 -0.5
4,636,666 + AMB_RS21370 0.27 -2.5
4,636,666 + AMB_RS21370 0.27 +0.4
4,636,666 + AMB_RS21370 0.27 +0.4
4,636,667 - AMB_RS21370 0.27 +0.4
4,636,667 - AMB_RS21370 0.27 -0.2
4,636,769 - AMB_RS21370 0.40 -0.6
4,636,769 - AMB_RS21370 0.40 -1.6
4,636,924 + AMB_RS21370 0.59 -0.6
4,636,951 + AMB_RS21370 0.62 -0.6
4,636,951 + AMB_RS21370 0.62 -0.6
4,636,951 + AMB_RS21370 0.62 -0.5
4,636,952 - AMB_RS21370 0.62 -0.6
4,636,952 - AMB_RS21370 0.62 +0.4
4,636,999 + AMB_RS21370 0.68 +0.4
4,636,999 + AMB_RS21370 0.68 -0.4
4,637,000 - AMB_RS21370 0.68 -1.2
4,637,000 - AMB_RS21370 0.68 -1.6
4,637,000 - AMB_RS21370 0.68 -2.5

Or see this region's nucleotide sequence