Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21245

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS21235 and AMB_RS21240 overlap by 4 nucleotidesAMB_RS21240 and AMB_RS21245 overlap by 4 nucleotidesAMB_RS21245 and AMB_RS21250 are separated by 138 nucleotides AMB_RS21235: AMB_RS21235 - heme transporter HemC, at 4,612,322 to 4,613,056 _RS21235 AMB_RS21240: AMB_RS21240 - heme exporter protein CcmD, at 4,613,053 to 4,613,262 _RS21240 AMB_RS21245: AMB_RS21245 - cytochrome c-type biogenesis protein CcmE, at 4,613,259 to 4,613,705 _RS21245 AMB_RS21250: AMB_RS21250 - heme lyase CcmF/NrfE family subunit, at 4,613,844 to 4,615,823 _RS21250 Position (kb) 4613 4614Strain fitness (log2 ratio) -3 -2 -1 0 1at 4613.828 kb on + strandat 4613.828 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
4,613,828 + -2.8
4,613,828 + -1.9

Or see this region's nucleotide sequence