Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21140

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21125 and AMB_RS21130 overlap by 1 nucleotidesAMB_RS21130 and AMB_RS21135 overlap by 28 nucleotidesAMB_RS21135 and AMB_RS21140 are separated by 154 nucleotidesAMB_RS21140 and AMB_RS21145 are separated by 93 nucleotidesAMB_RS21145 and AMB_RS21150 are separated by 93 nucleotides AMB_RS21125: AMB_RS21125 - YciI family protein, at 4,588,163 to 4,588,438 _RS21125 AMB_RS21130: AMB_RS21130 - EVE domain-containing protein, at 4,588,438 to 4,588,851 _RS21130 AMB_RS21135: AMB_RS21135 - Rieske (2Fe-2S) protein, at 4,588,824 to 4,589,177 _RS21135 AMB_RS21140: AMB_RS21140 - acetate--CoA ligase, at 4,589,332 to 4,591,269 _RS21140 AMB_RS21145: AMB_RS21145 - alpha/beta hydrolase, at 4,591,363 to 4,592,175 _RS21145 AMB_RS21150: AMB_RS21150 - heme exporter protein CcmB, at 4,592,269 to 4,592,934 _RS21150 Position (kb) 4589 4590 4591 4592Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4588.377 kb on - strand, within AMB_RS21125at 4588.377 kb on - strand, within AMB_RS21125at 4588.377 kb on - strand, within AMB_RS21125at 4588.419 kb on - strandat 4588.531 kb on + strand, within AMB_RS21130at 4588.531 kb on + strand, within AMB_RS21130at 4588.531 kb on + strand, within AMB_RS21130at 4588.532 kb on - strand, within AMB_RS21130at 4588.532 kb on - strand, within AMB_RS21130at 4588.532 kb on - strand, within AMB_RS21130at 4588.585 kb on + strand, within AMB_RS21130at 4588.585 kb on + strand, within AMB_RS21130at 4588.585 kb on + strand, within AMB_RS21130at 4588.586 kb on - strand, within AMB_RS21130at 4588.643 kb on - strand, within AMB_RS21130at 4588.968 kb on + strand, within AMB_RS21135at 4588.968 kb on + strand, within AMB_RS21135at 4588.968 kb on + strand, within AMB_RS21135at 4589.204 kb on + strandat 4589.204 kb on + strandat 4589.246 kb on + strandat 4589.246 kb on + strandat 4589.246 kb on + strandat 4589.246 kb on + strandat 4589.246 kb on + strandat 4589.246 kb on + strandat 4589.247 kb on - strandat 4589.247 kb on - strandat 4589.247 kb on - strandat 4589.247 kb on - strandat 4589.247 kb on - strandat 4589.262 kb on + strandat 4589.263 kb on - strandat 4589.345 kb on - strandat 4589.345 kb on - strandat 4589.345 kb on - strandat 4589.345 kb on - strandat 4589.395 kb on + strandat 4589.395 kb on + strandat 4589.395 kb on + strandat 4589.395 kb on + strandat 4589.407 kb on + strandat 4589.408 kb on - strandat 4589.408 kb on - strandat 4589.650 kb on + strand, within AMB_RS21140at 4589.650 kb on + strand, within AMB_RS21140at 4589.650 kb on + strand, within AMB_RS21140at 4589.650 kb on + strand, within AMB_RS21140at 4589.651 kb on - strand, within AMB_RS21140at 4589.734 kb on + strand, within AMB_RS21140at 4589.734 kb on + strand, within AMB_RS21140at 4589.734 kb on + strand, within AMB_RS21140at 4589.735 kb on - strand, within AMB_RS21140at 4589.735 kb on - strand, within AMB_RS21140at 4590.025 kb on + strand, within AMB_RS21140at 4590.025 kb on + strand, within AMB_RS21140at 4590.026 kb on - strand, within AMB_RS21140at 4590.103 kb on + strand, within AMB_RS21140at 4590.104 kb on - strand, within AMB_RS21140at 4590.158 kb on - strand, within AMB_RS21140at 4590.166 kb on + strand, within AMB_RS21140at 4590.166 kb on + strand, within AMB_RS21140at 4590.167 kb on - strand, within AMB_RS21140at 4590.187 kb on + strand, within AMB_RS21140at 4590.187 kb on + strand, within AMB_RS21140at 4590.188 kb on - strand, within AMB_RS21140at 4590.188 kb on - strand, within AMB_RS21140at 4590.188 kb on - strand, within AMB_RS21140at 4590.188 kb on - strand, within AMB_RS21140at 4590.188 kb on - strand, within AMB_RS21140at 4590.188 kb on - strand, within AMB_RS21140at 4590.217 kb on + strand, within AMB_RS21140at 4590.217 kb on + strand, within AMB_RS21140at 4590.217 kb on + strand, within AMB_RS21140at 4590.217 kb on + strand, within AMB_RS21140at 4590.217 kb on + strand, within AMB_RS21140at 4590.218 kb on - strand, within AMB_RS21140at 4590.218 kb on - strand, within AMB_RS21140at 4590.260 kb on - strand, within AMB_RS21140at 4590.260 kb on - strand, within AMB_RS21140at 4590.268 kb on + strand, within AMB_RS21140at 4590.268 kb on + strand, within AMB_RS21140at 4590.323 kb on - strand, within AMB_RS21140at 4590.323 kb on - strand, within AMB_RS21140at 4590.323 kb on - strand, within AMB_RS21140at 4590.379 kb on + strand, within AMB_RS21140at 4590.379 kb on + strand, within AMB_RS21140at 4590.380 kb on - strand, within AMB_RS21140at 4590.509 kb on - strand, within AMB_RS21140at 4590.781 kb on + strand, within AMB_RS21140at 4590.781 kb on + strand, within AMB_RS21140at 4590.794 kb on - strand, within AMB_RS21140at 4590.805 kb on + strand, within AMB_RS21140at 4590.805 kb on + strand, within AMB_RS21140at 4590.805 kb on + strand, within AMB_RS21140at 4590.806 kb on - strand, within AMB_RS21140at 4590.845 kb on - strand, within AMB_RS21140at 4590.848 kb on - strand, within AMB_RS21140at 4590.997 kb on + strand, within AMB_RS21140at 4590.997 kb on + strand, within AMB_RS21140at 4590.997 kb on + strand, within AMB_RS21140at 4590.997 kb on + strand, within AMB_RS21140at 4590.997 kb on + strand, within AMB_RS21140at 4590.997 kb on + strand, within AMB_RS21140at 4590.997 kb on + strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4590.998 kb on - strand, within AMB_RS21140at 4591.003 kb on + strand, within AMB_RS21140at 4591.003 kb on + strand, within AMB_RS21140at 4591.004 kb on - strand, within AMB_RS21140at 4591.004 kb on - strand, within AMB_RS21140at 4591.004 kb on - strand, within AMB_RS21140at 4591.004 kb on - strand, within AMB_RS21140at 4591.270 kb on + strandat 4591.270 kb on + strandat 4591.270 kb on + strandat 4591.270 kb on + strandat 4591.408 kb on + strandat 4591.408 kb on + strandat 4591.409 kb on - strandat 4591.409 kb on - strandat 4591.456 kb on + strand, within AMB_RS21145at 4591.456 kb on + strand, within AMB_RS21145at 4591.456 kb on + strand, within AMB_RS21145at 4591.457 kb on - strand, within AMB_RS21145at 4591.457 kb on - strand, within AMB_RS21145at 4591.457 kb on - strand, within AMB_RS21145at 4591.457 kb on - strand, within AMB_RS21145at 4591.558 kb on + strand, within AMB_RS21145at 4591.558 kb on + strand, within AMB_RS21145at 4591.559 kb on - strand, within AMB_RS21145at 4591.638 kb on + strand, within AMB_RS21145at 4591.639 kb on - strand, within AMB_RS21145at 4591.687 kb on + strand, within AMB_RS21145at 4591.735 kb on + strand, within AMB_RS21145at 4591.804 kb on + strand, within AMB_RS21145at 4591.805 kb on - strand, within AMB_RS21145at 4591.805 kb on - strand, within AMB_RS21145at 4591.915 kb on + strand, within AMB_RS21145at 4591.915 kb on + strand, within AMB_RS21145at 4591.916 kb on - strand, within AMB_RS21145at 4591.916 kb on - strand, within AMB_RS21145at 4592.057 kb on + strand, within AMB_RS21145at 4592.057 kb on + strand, within AMB_RS21145at 4592.058 kb on - strand, within AMB_RS21145at 4592.058 kb on - strand, within AMB_RS21145

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,588,377 - AMB_RS21125 0.78 -0.9
4,588,377 - AMB_RS21125 0.78 -0.4
4,588,377 - AMB_RS21125 0.78 -2.6
4,588,419 - +0.4
4,588,531 + AMB_RS21130 0.22 +0.4
4,588,531 + AMB_RS21130 0.22 -1.2
4,588,531 + AMB_RS21130 0.22 -1.2
4,588,532 - AMB_RS21130 0.23 -1.2
4,588,532 - AMB_RS21130 0.23 -3.1
4,588,532 - AMB_RS21130 0.23 -3.1
4,588,585 + AMB_RS21130 0.36 -0.6
4,588,585 + AMB_RS21130 0.36 -0.8
4,588,585 + AMB_RS21130 0.36 -2.3
4,588,586 - AMB_RS21130 0.36 +0.4
4,588,643 - AMB_RS21130 0.50 +0.4
4,588,968 + AMB_RS21135 0.41 -1.6
4,588,968 + AMB_RS21135 0.41 -0.6
4,588,968 + AMB_RS21135 0.41 -0.6
4,589,204 + -3.8
4,589,204 + +0.4
4,589,246 + +0.4
4,589,246 + -3.5
4,589,246 + -1.9
4,589,246 + -0.6
4,589,246 + -0.3
4,589,246 + -1.2
4,589,247 - -1.9
4,589,247 - -1.9
4,589,247 - +0.4
4,589,247 - -1.2
4,589,247 - -0.6
4,589,262 + -0.6
4,589,263 - -0.6
4,589,345 - -1.6
4,589,345 - -1.6
4,589,345 - +0.4
4,589,345 - -0.2
4,589,395 + -0.3
4,589,395 + -0.7
4,589,395 + -0.6
4,589,395 + -0.6
4,589,407 + -1.2
4,589,408 - +0.4
4,589,408 - -0.5
4,589,650 + AMB_RS21140 0.16 -1.6
4,589,650 + AMB_RS21140 0.16 -0.6
4,589,650 + AMB_RS21140 0.16 -0.6
4,589,650 + AMB_RS21140 0.16 +0.4
4,589,651 - AMB_RS21140 0.16 -1.6
4,589,734 + AMB_RS21140 0.21 -2.2
4,589,734 + AMB_RS21140 0.21 -1.2
4,589,734 + AMB_RS21140 0.21 -1.4
4,589,735 - AMB_RS21140 0.21 +0.4
4,589,735 - AMB_RS21140 0.21 -0.2
4,590,025 + AMB_RS21140 0.36 -1.2
4,590,025 + AMB_RS21140 0.36 -0.3
4,590,026 - AMB_RS21140 0.36 +0.4
4,590,103 + AMB_RS21140 0.40 +0.4
4,590,104 - AMB_RS21140 0.40 -3.3
4,590,158 - AMB_RS21140 0.43 +0.4
4,590,166 + AMB_RS21140 0.43 -0.0
4,590,166 + AMB_RS21140 0.43 +0.4
4,590,167 - AMB_RS21140 0.43 +0.4
4,590,187 + AMB_RS21140 0.44 +0.4
4,590,187 + AMB_RS21140 0.44 -2.8
4,590,188 - AMB_RS21140 0.44 -1.6
4,590,188 - AMB_RS21140 0.44 -1.9
4,590,188 - AMB_RS21140 0.44 -2.2
4,590,188 - AMB_RS21140 0.44 +0.4
4,590,188 - AMB_RS21140 0.44 +0.4
4,590,188 - AMB_RS21140 0.44 -2.6
4,590,217 + AMB_RS21140 0.46 -2.9
4,590,217 + AMB_RS21140 0.46 -3.4
4,590,217 + AMB_RS21140 0.46 -1.6
4,590,217 + AMB_RS21140 0.46 -1.2
4,590,217 + AMB_RS21140 0.46 -0.6
4,590,218 - AMB_RS21140 0.46 -0.6
4,590,218 - AMB_RS21140 0.46 -1.9
4,590,260 - AMB_RS21140 0.48 +0.4
4,590,260 - AMB_RS21140 0.48 +0.4
4,590,268 + AMB_RS21140 0.48 -0.6
4,590,268 + AMB_RS21140 0.48 -0.6
4,590,323 - AMB_RS21140 0.51 +0.0
4,590,323 - AMB_RS21140 0.51 +0.4
4,590,323 - AMB_RS21140 0.51 -2.2
4,590,379 + AMB_RS21140 0.54 -2.2
4,590,379 + AMB_RS21140 0.54 -1.6
4,590,380 - AMB_RS21140 0.54 +0.4
4,590,509 - AMB_RS21140 0.61 -0.3
4,590,781 + AMB_RS21140 0.75 +0.1
4,590,781 + AMB_RS21140 0.75 -1.9
4,590,794 - AMB_RS21140 0.75 -1.6
4,590,805 + AMB_RS21140 0.76 -0.6
4,590,805 + AMB_RS21140 0.76 -1.2
4,590,805 + AMB_RS21140 0.76 -0.6
4,590,806 - AMB_RS21140 0.76 -0.6
4,590,845 - AMB_RS21140 0.78 +0.4
4,590,848 - AMB_RS21140 0.78 -0.3
4,590,997 + AMB_RS21140 0.86 -0.6
4,590,997 + AMB_RS21140 0.86 -1.9
4,590,997 + AMB_RS21140 0.86 -1.9
4,590,997 + AMB_RS21140 0.86 -1.9
4,590,997 + AMB_RS21140 0.86 -0.6
4,590,997 + AMB_RS21140 0.86 -0.6
4,590,997 + AMB_RS21140 0.86 +0.4
4,590,998 - AMB_RS21140 0.86 -0.6
4,590,998 - AMB_RS21140 0.86 -2.8
4,590,998 - AMB_RS21140 0.86 -0.6
4,590,998 - AMB_RS21140 0.86 -0.6
4,590,998 - AMB_RS21140 0.86 -1.9
4,590,998 - AMB_RS21140 0.86 -0.7
4,590,998 - AMB_RS21140 0.86 -0.6
4,590,998 - AMB_RS21140 0.86 -2.6
4,590,998 - AMB_RS21140 0.86 -1.0
4,590,998 - AMB_RS21140 0.86 -3.8
4,591,003 + AMB_RS21140 0.86 -1.6
4,591,003 + AMB_RS21140 0.86 -0.6
4,591,004 - AMB_RS21140 0.86 -2.4
4,591,004 - AMB_RS21140 0.86 -1.6
4,591,004 - AMB_RS21140 0.86 -0.6
4,591,004 - AMB_RS21140 0.86 -2.2
4,591,270 + -0.2
4,591,270 + +0.4
4,591,270 + -0.6
4,591,270 + -0.2
4,591,408 + +0.4
4,591,408 + -1.2
4,591,409 - -0.6
4,591,409 - -2.1
4,591,456 + AMB_RS21145 0.11 -0.6
4,591,456 + AMB_RS21145 0.11 -1.2
4,591,456 + AMB_RS21145 0.11 -2.4
4,591,457 - AMB_RS21145 0.12 -2.2
4,591,457 - AMB_RS21145 0.12 -1.2
4,591,457 - AMB_RS21145 0.12 +0.4
4,591,457 - AMB_RS21145 0.12 -2.3
4,591,558 + AMB_RS21145 0.24 -0.0
4,591,558 + AMB_RS21145 0.24 -2.7
4,591,559 - AMB_RS21145 0.24 +0.4
4,591,638 + AMB_RS21145 0.34 -2.2
4,591,639 - AMB_RS21145 0.34 -0.2
4,591,687 + AMB_RS21145 0.40 -1.2
4,591,735 + AMB_RS21145 0.46 -1.9
4,591,804 + AMB_RS21145 0.54 -0.0
4,591,805 - AMB_RS21145 0.54 +0.4
4,591,805 - AMB_RS21145 0.54 -0.2
4,591,915 + AMB_RS21145 0.68 -1.2
4,591,915 + AMB_RS21145 0.68 -1.9
4,591,916 - AMB_RS21145 0.68 -1.2
4,591,916 - AMB_RS21145 0.68 +1.4
4,592,057 + AMB_RS21145 0.85 -2.6
4,592,057 + AMB_RS21145 0.85 -0.6
4,592,058 - AMB_RS21145 0.85 -2.8
4,592,058 - AMB_RS21145 0.85 -0.6

Or see this region's nucleotide sequence