Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21050 and AMB_RS21055 overlap by 52 nucleotides AMB_RS21055 and AMB_RS21060 are separated by 25 nucleotides AMB_RS21060 and AMB_RS21065 overlap by 4 nucleotides
AMB_RS21050: AMB_RS21050 - CoA pyrophosphatase, at 4,572,785 to 4,573,480
_RS21050
AMB_RS21055: AMB_RS21055 - DUF1285 domain-containing protein, at 4,573,429 to 4,573,992
_RS21055
AMB_RS21060: AMB_RS21060 - MoxR family ATPase, at 4,574,018 to 4,575,010
_RS21060
AMB_RS21065: AMB_RS21065 - double-strand break repair helicase AddA, at 4,575,007 to 4,578,471
_RS21065
Position (kb) 4574
4575
4576 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4573.046 kb on - strand, within AMB_RS21050 at 4573.046 kb on - strand, within AMB_RS21050 at 4573.072 kb on - strand, within AMB_RS21050 at 4573.480 kb on + strand at 4573.480 kb on + strand at 4573.480 kb on + strand at 4573.480 kb on + strand at 4573.481 kb on - strand at 4573.481 kb on - strand at 4573.481 kb on - strand at 4573.487 kb on + strand, within AMB_RS21055 at 4573.538 kb on + strand, within AMB_RS21055 at 4573.539 kb on - strand, within AMB_RS21055 at 4573.539 kb on - strand, within AMB_RS21055 at 4573.539 kb on - strand, within AMB_RS21055 at 4573.539 kb on - strand, within AMB_RS21055 at 4573.541 kb on + strand, within AMB_RS21055 at 4573.541 kb on + strand, within AMB_RS21055 at 4573.589 kb on + strand, within AMB_RS21055 at 4573.590 kb on - strand, within AMB_RS21055 at 4573.668 kb on + strand, within AMB_RS21055 at 4573.669 kb on - strand, within AMB_RS21055 at 4573.669 kb on - strand, within AMB_RS21055 at 4573.788 kb on - strand, within AMB_RS21055 at 4573.809 kb on - strand, within AMB_RS21055 at 4573.809 kb on - strand, within AMB_RS21055 at 4573.865 kb on + strand, within AMB_RS21055 at 4573.865 kb on + strand, within AMB_RS21055 at 4573.865 kb on + strand, within AMB_RS21055 at 4573.865 kb on + strand, within AMB_RS21055 at 4573.865 kb on + strand, within AMB_RS21055 at 4573.866 kb on - strand, within AMB_RS21055 at 4573.866 kb on - strand, within AMB_RS21055 at 4573.866 kb on - strand, within AMB_RS21055 at 4573.866 kb on - strand, within AMB_RS21055 at 4574.146 kb on + strand, within AMB_RS21060 at 4574.358 kb on + strand, within AMB_RS21060 at 4575.006 kb on + strand at 4575.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,573,046 - AMB_RS21050 0.38 -0.6 4,573,046 - AMB_RS21050 0.38 +0.4 4,573,072 - AMB_RS21050 0.41 +0.4 4,573,480 + +0.4 4,573,480 + +1.4 4,573,480 + +0.4 4,573,480 + +0.4 4,573,481 - -0.6 4,573,481 - -3.3 4,573,481 - -1.6 4,573,487 + AMB_RS21055 0.10 -0.3 4,573,538 + AMB_RS21055 0.19 -2.4 4,573,539 - AMB_RS21055 0.20 -3.1 4,573,539 - AMB_RS21055 0.20 -0.1 4,573,539 - AMB_RS21055 0.20 -0.6 4,573,539 - AMB_RS21055 0.20 -1.6 4,573,541 + AMB_RS21055 0.20 -1.9 4,573,541 + AMB_RS21055 0.20 -0.6 4,573,589 + AMB_RS21055 0.28 +0.4 4,573,590 - AMB_RS21055 0.29 -3.3 4,573,668 + AMB_RS21055 0.42 -1.6 4,573,669 - AMB_RS21055 0.43 -2.2 4,573,669 - AMB_RS21055 0.43 -2.2 4,573,788 - AMB_RS21055 0.64 -1.9 4,573,809 - AMB_RS21055 0.67 +0.4 4,573,809 - AMB_RS21055 0.67 +0.4 4,573,865 + AMB_RS21055 0.77 -0.6 4,573,865 + AMB_RS21055 0.77 -2.6 4,573,865 + AMB_RS21055 0.77 +0.4 4,573,865 + AMB_RS21055 0.77 +1.4 4,573,865 + AMB_RS21055 0.77 -3.1 4,573,866 - AMB_RS21055 0.77 +0.4 4,573,866 - AMB_RS21055 0.77 -1.2 4,573,866 - AMB_RS21055 0.77 -0.6 4,573,866 - AMB_RS21055 0.77 +0.4 4,574,146 + AMB_RS21060 0.13 -1.2 4,574,358 + AMB_RS21060 0.34 -0.9 4,575,006 + -2.8 4,575,120 - -0.6
Or see this region's nucleotide sequence