Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20935 and AMB_RS20940 are separated by 20 nucleotides AMB_RS20940 and AMB_RS20945 are separated by 22 nucleotides AMB_RS20945 and AMB_RS20950 overlap by 1 nucleotides AMB_RS20950 and AMB_RS20955 are separated by 322 nucleotides
AMB_RS20935: AMB_RS20935 - ATP synthase subunit beta, at 4,544,377 to 4,545,801
_RS20935
AMB_RS20940: AMB_RS20940 - ATP synthase subunit gamma, at 4,545,822 to 4,546,706
_RS20940
AMB_RS20945: AMB_RS20945 - ATP synthase subunit alpha, at 4,546,729 to 4,548,258
_RS20945
AMB_RS20950: AMB_RS20950 - F0F1 ATP synthase subunit delta, at 4,548,258 to 4,548,812
_RS20950
AMB_RS20955: AMB_RS20955 - zinc ribbon domain-containing protein, at 4,549,135 to 4,549,368
_RS20955
Position (kb)
4546
4547
4548
4549 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4545.813 kb on - strand at 4545.813 kb on - strand at 4549.045 kb on + strand at 4549.046 kb on - strand at 4549.090 kb on + strand at 4549.091 kb on - strand at 4549.091 kb on - strand at 4549.091 kb on - strand at 4549.141 kb on + strand at 4549.142 kb on - strand at 4549.142 kb on - strand at 4549.142 kb on - strand at 4549.144 kb on + strand at 4549.144 kb on + strand at 4549.144 kb on + strand at 4549.145 kb on - strand at 4549.145 kb on - strand at 4549.145 kb on - strand at 4549.145 kb on - strand at 4549.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,545,813 - -3.1 4,545,813 - -3.1 4,549,045 + -0.6 4,549,046 - +0.4 4,549,090 + -0.6 4,549,091 - -2.1 4,549,091 - -1.9 4,549,091 - -1.6 4,549,141 + -3.4 4,549,142 - -0.6 4,549,142 - +0.4 4,549,142 - -3.5 4,549,144 + +0.4 4,549,144 + +0.4 4,549,144 + -0.6 4,549,145 - +0.4 4,549,145 - -0.1 4,549,145 - -0.2 4,549,145 - -1.6 4,549,145 - -0.6
Or see this region's nucleotide sequence