Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20945

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20935 and AMB_RS20940 are separated by 20 nucleotidesAMB_RS20940 and AMB_RS20945 are separated by 22 nucleotidesAMB_RS20945 and AMB_RS20950 overlap by 1 nucleotidesAMB_RS20950 and AMB_RS20955 are separated by 322 nucleotides AMB_RS20935: AMB_RS20935 - ATP synthase subunit beta, at 4,544,377 to 4,545,801 _RS20935 AMB_RS20940: AMB_RS20940 - ATP synthase subunit gamma, at 4,545,822 to 4,546,706 _RS20940 AMB_RS20945: AMB_RS20945 - ATP synthase subunit alpha, at 4,546,729 to 4,548,258 _RS20945 AMB_RS20950: AMB_RS20950 - F0F1 ATP synthase subunit delta, at 4,548,258 to 4,548,812 _RS20950 AMB_RS20955: AMB_RS20955 - zinc ribbon domain-containing protein, at 4,549,135 to 4,549,368 _RS20955 Position (kb) 4546 4547 4548 4549Strain fitness (log2 ratio) -3 -2 -1 0 1at 4545.813 kb on - strandat 4545.813 kb on - strandat 4549.045 kb on + strandat 4549.046 kb on - strandat 4549.090 kb on + strandat 4549.091 kb on - strandat 4549.091 kb on - strandat 4549.091 kb on - strandat 4549.141 kb on + strandat 4549.142 kb on - strandat 4549.142 kb on - strandat 4549.142 kb on - strandat 4549.144 kb on + strandat 4549.144 kb on + strandat 4549.144 kb on + strandat 4549.145 kb on - strandat 4549.145 kb on - strandat 4549.145 kb on - strandat 4549.145 kb on - strandat 4549.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,545,813 - -3.1
4,545,813 - -3.1
4,549,045 + -0.6
4,549,046 - +0.4
4,549,090 + -0.6
4,549,091 - -2.1
4,549,091 - -1.9
4,549,091 - -1.6
4,549,141 + -3.4
4,549,142 - -0.6
4,549,142 - +0.4
4,549,142 - -3.5
4,549,144 + +0.4
4,549,144 + +0.4
4,549,144 + -0.6
4,549,145 - +0.4
4,549,145 - -0.1
4,549,145 - -0.2
4,549,145 - -1.6
4,549,145 - -0.6

Or see this region's nucleotide sequence