Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20815

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS20810 and AMB_RS20815 are separated by 9 nucleotidesAMB_RS20815 and AMB_RS20820 are separated by 170 nucleotides AMB_RS20810: AMB_RS20810 - tRNA pseudouridine(55) synthase TruB, at 4,519,601 to 4,520,536 _RS20810 AMB_RS20815: AMB_RS20815 - 30S ribosomal protein S15, at 4,520,546 to 4,520,815 _RS20815 AMB_RS20820: AMB_RS20820 - polyribonucleotide nucleotidyltransferase, at 4,520,986 to 4,523,148 _RS20820 Position (kb) 4520 4521Strain fitness (log2 ratio) -3 -2 -1 0 1at 4519.756 kb on + strand, within AMB_RS20810at 4519.799 kb on + strand, within AMB_RS20810at 4519.799 kb on + strand, within AMB_RS20810at 4519.799 kb on + strand, within AMB_RS20810at 4519.799 kb on + strand, within AMB_RS20810at 4519.799 kb on + strand, within AMB_RS20810at 4519.799 kb on + strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.800 kb on - strand, within AMB_RS20810at 4519.823 kb on + strand, within AMB_RS20810at 4519.823 kb on + strand, within AMB_RS20810at 4519.824 kb on - strand, within AMB_RS20810at 4519.824 kb on - strand, within AMB_RS20810at 4519.824 kb on - strand, within AMB_RS20810at 4519.973 kb on + strand, within AMB_RS20810at 4519.973 kb on + strand, within AMB_RS20810at 4519.973 kb on + strand, within AMB_RS20810at 4519.973 kb on + strand, within AMB_RS20810at 4519.973 kb on + strand, within AMB_RS20810at 4519.973 kb on + strand, within AMB_RS20810at 4519.973 kb on + strand, within AMB_RS20810at 4519.974 kb on - strand, within AMB_RS20810at 4520.006 kb on + strand, within AMB_RS20810at 4520.006 kb on + strand, within AMB_RS20810at 4520.006 kb on + strand, within AMB_RS20810at 4520.006 kb on + strand, within AMB_RS20810at 4520.007 kb on - strand, within AMB_RS20810at 4520.007 kb on - strand, within AMB_RS20810at 4520.135 kb on + strand, within AMB_RS20810at 4520.135 kb on + strand, within AMB_RS20810at 4520.135 kb on + strand, within AMB_RS20810at 4520.135 kb on + strand, within AMB_RS20810at 4520.135 kb on + strand, within AMB_RS20810at 4520.135 kb on + strand, within AMB_RS20810at 4520.135 kb on + strand, within AMB_RS20810at 4520.135 kb on + strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.136 kb on - strand, within AMB_RS20810at 4520.893 kb on + strandat 4520.893 kb on + strandat 4520.964 kb on + strandat 4520.970 kb on + strandat 4520.970 kb on + strandat 4520.970 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
4,519,756 + AMB_RS20810 0.17 +0.4
4,519,799 + AMB_RS20810 0.21 -1.6
4,519,799 + AMB_RS20810 0.21 +0.4
4,519,799 + AMB_RS20810 0.21 -1.6
4,519,799 + AMB_RS20810 0.21 -2.2
4,519,799 + AMB_RS20810 0.21 +0.0
4,519,799 + AMB_RS20810 0.21 -1.6
4,519,800 - AMB_RS20810 0.21 -3.6
4,519,800 - AMB_RS20810 0.21 -0.6
4,519,800 - AMB_RS20810 0.21 -0.6
4,519,800 - AMB_RS20810 0.21 -0.5
4,519,800 - AMB_RS20810 0.21 +0.4
4,519,800 - AMB_RS20810 0.21 -2.2
4,519,800 - AMB_RS20810 0.21 -1.9
4,519,800 - AMB_RS20810 0.21 -1.2
4,519,800 - AMB_RS20810 0.21 -0.4
4,519,823 + AMB_RS20810 0.24 +0.4
4,519,823 + AMB_RS20810 0.24 -1.2
4,519,824 - AMB_RS20810 0.24 -0.6
4,519,824 - AMB_RS20810 0.24 -2.1
4,519,824 - AMB_RS20810 0.24 -1.6
4,519,973 + AMB_RS20810 0.40 -0.6
4,519,973 + AMB_RS20810 0.40 -0.8
4,519,973 + AMB_RS20810 0.40 -2.9
4,519,973 + AMB_RS20810 0.40 -0.6
4,519,973 + AMB_RS20810 0.40 +0.4
4,519,973 + AMB_RS20810 0.40 -1.2
4,519,973 + AMB_RS20810 0.40 -0.6
4,519,974 - AMB_RS20810 0.40 +0.0
4,520,006 + AMB_RS20810 0.43 +0.4
4,520,006 + AMB_RS20810 0.43 +0.4
4,520,006 + AMB_RS20810 0.43 -0.6
4,520,006 + AMB_RS20810 0.43 -0.7
4,520,007 - AMB_RS20810 0.43 +0.4
4,520,007 - AMB_RS20810 0.43 +0.4
4,520,135 + AMB_RS20810 0.57 -0.6
4,520,135 + AMB_RS20810 0.57 -2.6
4,520,135 + AMB_RS20810 0.57 -1.6
4,520,135 + AMB_RS20810 0.57 -0.9
4,520,135 + AMB_RS20810 0.57 -0.4
4,520,135 + AMB_RS20810 0.57 -0.6
4,520,135 + AMB_RS20810 0.57 -0.2
4,520,135 + AMB_RS20810 0.57 -0.6
4,520,136 - AMB_RS20810 0.57 -1.9
4,520,136 - AMB_RS20810 0.57 -0.6
4,520,136 - AMB_RS20810 0.57 -0.6
4,520,136 - AMB_RS20810 0.57 -1.6
4,520,136 - AMB_RS20810 0.57 -0.6
4,520,136 - AMB_RS20810 0.57 -0.6
4,520,136 - AMB_RS20810 0.57 -1.2
4,520,136 - AMB_RS20810 0.57 -0.2
4,520,136 - AMB_RS20810 0.57 -0.7
4,520,136 - AMB_RS20810 0.57 -1.9
4,520,136 - AMB_RS20810 0.57 -0.1
4,520,893 + -1.2
4,520,893 + -0.2
4,520,964 + +0.4
4,520,970 + -1.2
4,520,970 + +0.4
4,520,970 + -0.6

Or see this region's nucleotide sequence