Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20765 and AMB_RS20770 are separated by 64 nucleotides AMB_RS20770 and AMB_RS20775 are separated by 7 nucleotides
AMB_RS20765: AMB_RS20765 - leucyl aminopeptidase family protein, at 4,510,477 to 4,511,862
_RS20765
AMB_RS20770: AMB_RS20770 - TrkH family potassium uptake protein, at 4,511,927 to 4,513,375
_RS20770
AMB_RS20775: AMB_RS20775 - TrkH family potassium uptake protein, at 4,513,383 to 4,514,831
_RS20775
Position (kb) 4511
4512
4513
4514 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4511.050 kb on + strand, within AMB_RS20765 at 4511.051 kb on - strand, within AMB_RS20765 at 4511.051 kb on - strand, within AMB_RS20765 at 4511.051 kb on - strand, within AMB_RS20765 at 4511.873 kb on + strand at 4511.908 kb on - strand at 4512.446 kb on - strand, within AMB_RS20770 at 4512.488 kb on + strand, within AMB_RS20770 at 4512.488 kb on + strand, within AMB_RS20770 at 4512.489 kb on - strand, within AMB_RS20770 at 4512.746 kb on + strand, within AMB_RS20770 at 4512.746 kb on + strand, within AMB_RS20770 at 4513.064 kb on + strand, within AMB_RS20770 at 4513.124 kb on + strand, within AMB_RS20770 at 4513.262 kb on + strand at 4513.361 kb on + strand at 4513.361 kb on + strand at 4513.361 kb on + strand at 4513.361 kb on + strand at 4513.593 kb on + strand, within AMB_RS20775 at 4513.593 kb on + strand, within AMB_RS20775 at 4513.593 kb on + strand, within AMB_RS20775 at 4513.593 kb on + strand, within AMB_RS20775 at 4513.594 kb on - strand, within AMB_RS20775 at 4513.653 kb on + strand, within AMB_RS20775 at 4513.653 kb on + strand, within AMB_RS20775 at 4513.670 kb on - strand, within AMB_RS20775 at 4513.729 kb on + strand, within AMB_RS20775 at 4513.729 kb on + strand, within AMB_RS20775 at 4513.876 kb on + strand, within AMB_RS20775 at 4513.941 kb on + strand, within AMB_RS20775 at 4513.942 kb on - strand, within AMB_RS20775 at 4514.202 kb on + strand, within AMB_RS20775 at 4514.202 kb on + strand, within AMB_RS20775 at 4514.346 kb on + strand, within AMB_RS20775
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,511,050 + AMB_RS20765 0.41 -0.6 4,511,051 - AMB_RS20765 0.41 -1.6 4,511,051 - AMB_RS20765 0.41 -3.3 4,511,051 - AMB_RS20765 0.41 -1.2 4,511,873 + -3.2 4,511,908 - -1.6 4,512,446 - AMB_RS20770 0.36 -1.6 4,512,488 + AMB_RS20770 0.39 +0.4 4,512,488 + AMB_RS20770 0.39 -0.6 4,512,489 - AMB_RS20770 0.39 -0.6 4,512,746 + AMB_RS20770 0.57 -1.9 4,512,746 + AMB_RS20770 0.57 -2.8 4,513,064 + AMB_RS20770 0.78 -1.6 4,513,124 + AMB_RS20770 0.83 -1.9 4,513,262 + -1.6 4,513,361 + +0.4 4,513,361 + +0.4 4,513,361 + -1.6 4,513,361 + +0.4 4,513,593 + AMB_RS20775 0.14 -2.4 4,513,593 + AMB_RS20775 0.14 -1.9 4,513,593 + AMB_RS20775 0.14 +0.4 4,513,593 + AMB_RS20775 0.14 -0.6 4,513,594 - AMB_RS20775 0.15 -0.6 4,513,653 + AMB_RS20775 0.19 +0.4 4,513,653 + AMB_RS20775 0.19 -0.1 4,513,670 - AMB_RS20775 0.20 -2.8 4,513,729 + AMB_RS20775 0.24 -1.2 4,513,729 + AMB_RS20775 0.24 -1.9 4,513,876 + AMB_RS20775 0.34 +0.4 4,513,941 + AMB_RS20775 0.39 +0.0 4,513,942 - AMB_RS20775 0.39 -0.9 4,514,202 + AMB_RS20775 0.57 +0.4 4,514,202 + AMB_RS20775 0.57 -0.6 4,514,346 + AMB_RS20775 0.66 -1.9
Or see this region's nucleotide sequence