Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20565

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS20560 and AMB_RS20565 are separated by 13 nucleotidesAMB_RS20565 and AMB_RS20570 are separated by 94 nucleotides AMB_RS20560: AMB_RS20560 - 3-isopropylmalate dehydratase large subunit, at 4,467,341 to 4,468,744 _RS20560 AMB_RS20565: AMB_RS20565 - 3-isopropylmalate dehydratase small subunit, at 4,468,758 to 4,469,363 _RS20565 AMB_RS20570: AMB_RS20570 - 3-isopropylmalate dehydrogenase, at 4,469,458 to 4,470,567 _RS20570 Position (kb) 4468 4469 4470Strain fitness (log2 ratio) -2 -1 0 1at 4468.742 kb on + strandat 4469.435 kb on + strandat 4469.439 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
4,468,742 + -2.2
4,469,435 + -0.3
4,469,439 + -0.6

Or see this region's nucleotide sequence