Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20320 and AMB_RS20325 are separated by 202 nucleotides AMB_RS20325 and AMB_RS20330 are separated by 60 nucleotides AMB_RS20330 and AMB_RS20335 are separated by 113 nucleotides
AMB_RS20320: AMB_RS20320 - hybrid sensor histidine kinase/response regulator, at 4,423,236 to 4,425,398
_RS20320
AMB_RS20325: AMB_RS20325 - flavodoxin family protein, at 4,425,601 to 4,426,164
_RS20325
AMB_RS20330: AMB_RS20330 - Rrf2 family transcriptional regulator, at 4,426,225 to 4,426,647
_RS20330
AMB_RS20335: AMB_RS20335 - SAM-dependent methyltransferase, at 4,426,761 to 4,428,383
_RS20335
Position (kb) 4426
4427 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4425.292 kb on + strand at 4425.292 kb on + strand at 4425.293 kb on - strand at 4425.410 kb on + strand at 4425.411 kb on - strand at 4425.411 kb on - strand at 4425.414 kb on + strand at 4425.415 kb on - strand at 4425.419 kb on + strand at 4425.420 kb on - strand at 4425.420 kb on - strand at 4425.436 kb on + strand at 4425.436 kb on + strand at 4425.436 kb on + strand at 4425.436 kb on + strand at 4425.437 kb on - strand at 4425.437 kb on - strand at 4425.602 kb on + strand at 4425.921 kb on - strand, within AMB_RS20325 at 4425.980 kb on + strand, within AMB_RS20325 at 4425.980 kb on + strand, within AMB_RS20325 at 4425.980 kb on + strand, within AMB_RS20325 at 4425.980 kb on + strand, within AMB_RS20325 at 4425.980 kb on + strand, within AMB_RS20325 at 4425.980 kb on + strand, within AMB_RS20325 at 4425.981 kb on - strand, within AMB_RS20325 at 4425.981 kb on - strand, within AMB_RS20325 at 4425.981 kb on - strand, within AMB_RS20325 at 4425.981 kb on - strand, within AMB_RS20325 at 4426.122 kb on + strand at 4426.227 kb on - strand at 4426.658 kb on + strand at 4426.735 kb on + strand at 4426.735 kb on + strand at 4426.735 kb on + strand at 4426.736 kb on - strand at 4426.736 kb on - strand at 4426.902 kb on + strand at 4426.902 kb on + strand at 4426.902 kb on + strand at 4426.902 kb on + strand at 4427.040 kb on + strand, within AMB_RS20335 at 4427.040 kb on + strand, within AMB_RS20335 at 4427.040 kb on + strand, within AMB_RS20335 at 4427.040 kb on + strand, within AMB_RS20335 at 4427.040 kb on + strand, within AMB_RS20335 at 4427.041 kb on - strand, within AMB_RS20335 at 4427.041 kb on - strand, within AMB_RS20335 at 4427.041 kb on - strand, within AMB_RS20335 at 4427.062 kb on - strand, within AMB_RS20335 at 4427.319 kb on + strand, within AMB_RS20335 at 4427.319 kb on + strand, within AMB_RS20335 at 4427.320 kb on - strand, within AMB_RS20335 at 4427.349 kb on + strand, within AMB_RS20335 at 4427.619 kb on + strand, within AMB_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,425,292 + -2.4 4,425,292 + -1.6 4,425,293 - -1.9 4,425,410 + +0.4 4,425,411 - -1.2 4,425,411 - -0.6 4,425,414 + -0.2 4,425,415 - -1.2 4,425,419 + -1.6 4,425,420 - +0.4 4,425,420 - -1.2 4,425,436 + -1.2 4,425,436 + -0.3 4,425,436 + +0.4 4,425,436 + -0.3 4,425,437 - -0.6 4,425,437 - -0.0 4,425,602 + +0.4 4,425,921 - AMB_RS20325 0.57 -0.4 4,425,980 + AMB_RS20325 0.67 -1.2 4,425,980 + AMB_RS20325 0.67 -3.4 4,425,980 + AMB_RS20325 0.67 +0.4 4,425,980 + AMB_RS20325 0.67 -0.6 4,425,980 + AMB_RS20325 0.67 -1.2 4,425,980 + AMB_RS20325 0.67 -3.4 4,425,981 - AMB_RS20325 0.67 -3.2 4,425,981 - AMB_RS20325 0.67 -3.0 4,425,981 - AMB_RS20325 0.67 -1.6 4,425,981 - AMB_RS20325 0.67 +0.4 4,426,122 + +0.4 4,426,227 - +0.0 4,426,658 + -1.2 4,426,735 + -0.2 4,426,735 + -0.6 4,426,735 + +0.4 4,426,736 - -0.6 4,426,736 - -1.2 4,426,902 + -2.2 4,426,902 + -0.6 4,426,902 + -0.8 4,426,902 + -1.2 4,427,040 + AMB_RS20335 0.17 -0.6 4,427,040 + AMB_RS20335 0.17 -0.0 4,427,040 + AMB_RS20335 0.17 +0.4 4,427,040 + AMB_RS20335 0.17 -1.6 4,427,040 + AMB_RS20335 0.17 -0.1 4,427,041 - AMB_RS20335 0.17 -1.9 4,427,041 - AMB_RS20335 0.17 +0.0 4,427,041 - AMB_RS20335 0.17 -2.6 4,427,062 - AMB_RS20335 0.19 -0.6 4,427,319 + AMB_RS20335 0.34 -1.2 4,427,319 + AMB_RS20335 0.34 -1.9 4,427,320 - AMB_RS20335 0.34 -0.6 4,427,349 + AMB_RS20335 0.36 -1.9 4,427,619 + AMB_RS20335 0.53 -3.1
Or see this region's nucleotide sequence