Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20105

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20100 and AMB_RS20105 are separated by 136 nucleotidesAMB_RS20105 and AMB_RS20110 are separated by 22 nucleotides AMB_RS20100: AMB_RS20100 - homoserine O-acetyltransferase, at 4,382,625 to 4,383,806 _RS20100 AMB_RS20105: AMB_RS20105 - chorismate mutase, at 4,383,943 to 4,384,818 _RS20105 AMB_RS20110: AMB_RS20110 - histidinol-phosphate aminotransferase, at 4,384,841 to 4,385,932 _RS20110 Position (kb) 4383 4384 4385Strain fitness (log2 ratio) -2 -1 0 1at 4383.837 kb on - strandat 4383.837 kb on - strandat 4383.837 kb on - strandat 4383.837 kb on - strandat 4383.841 kb on - strandat 4383.841 kb on - strandat 4383.841 kb on - strandat 4383.841 kb on - strandat 4383.841 kb on - strandat 4383.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,383,837 - -2.2
4,383,837 - -1.2
4,383,837 - -2.6
4,383,837 - +0.4
4,383,841 - -0.6
4,383,841 - +0.4
4,383,841 - -1.9
4,383,841 - -1.6
4,383,841 - -2.2
4,383,896 + +0.4

Or see this region's nucleotide sequence