Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20090 and AMB_RS20095 are separated by 195 nucleotides AMB_RS20095 and AMB_RS20100 overlap by 4 nucleotides AMB_RS20100 and AMB_RS20105 are separated by 136 nucleotides
AMB_RS20090: AMB_RS20090 - methyl-accepting chemotaxis protein, at 4,380,091 to 4,381,806
_RS20090
AMB_RS20095: AMB_RS20095 - methionine biosynthesis protein MetW, at 4,382,002 to 4,382,628
_RS20095
AMB_RS20100: AMB_RS20100 - homoserine O-acetyltransferase, at 4,382,625 to 4,383,806
_RS20100
AMB_RS20105: AMB_RS20105 - chorismate mutase, at 4,383,943 to 4,384,818
_RS20105
Position (kb)
4382
4383
4384 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4381.805 kb on - strand at 4381.805 kb on - strand at 4381.805 kb on - strand at 4381.899 kb on - strand at 4381.899 kb on - strand at 4381.899 kb on - strand at 4381.912 kb on - strand at 4381.912 kb on - strand at 4381.915 kb on - strand at 4381.915 kb on - strand at 4381.915 kb on - strand at 4382.003 kb on + strand at 4383.837 kb on - strand at 4383.837 kb on - strand at 4383.837 kb on - strand at 4383.837 kb on - strand at 4383.841 kb on - strand at 4383.841 kb on - strand at 4383.841 kb on - strand at 4383.841 kb on - strand at 4383.841 kb on - strand at 4383.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 4,381,805 - -0.6 4,381,805 - -0.6 4,381,805 - -3.5 4,381,899 - -1.6 4,381,899 - -3.0 4,381,899 - -0.2 4,381,912 - -0.2 4,381,912 - -0.9 4,381,915 - -2.2 4,381,915 - -0.6 4,381,915 - -0.6 4,382,003 + -0.6 4,383,837 - -2.2 4,383,837 - -1.2 4,383,837 - -2.6 4,383,837 - +0.4 4,383,841 - -0.6 4,383,841 - +0.4 4,383,841 - -1.9 4,383,841 - -1.6 4,383,841 - -2.2 4,383,896 + +0.4
Or see this region's nucleotide sequence