Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20100

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20090 and AMB_RS20095 are separated by 195 nucleotidesAMB_RS20095 and AMB_RS20100 overlap by 4 nucleotidesAMB_RS20100 and AMB_RS20105 are separated by 136 nucleotides AMB_RS20090: AMB_RS20090 - methyl-accepting chemotaxis protein, at 4,380,091 to 4,381,806 _RS20090 AMB_RS20095: AMB_RS20095 - methionine biosynthesis protein MetW, at 4,382,002 to 4,382,628 _RS20095 AMB_RS20100: AMB_RS20100 - homoserine O-acetyltransferase, at 4,382,625 to 4,383,806 _RS20100 AMB_RS20105: AMB_RS20105 - chorismate mutase, at 4,383,943 to 4,384,818 _RS20105 Position (kb) 4382 4383 4384Strain fitness (log2 ratio) -3 -2 -1 0 1at 4381.805 kb on - strandat 4381.805 kb on - strandat 4381.805 kb on - strandat 4381.899 kb on - strandat 4381.899 kb on - strandat 4381.899 kb on - strandat 4381.912 kb on - strandat 4381.912 kb on - strandat 4381.915 kb on - strandat 4381.915 kb on - strandat 4381.915 kb on - strandat 4382.003 kb on + strandat 4383.837 kb on - strandat 4383.837 kb on - strandat 4383.837 kb on - strandat 4383.837 kb on - strandat 4383.841 kb on - strandat 4383.841 kb on - strandat 4383.841 kb on - strandat 4383.841 kb on - strandat 4383.841 kb on - strandat 4383.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,381,805 - -0.6
4,381,805 - -0.6
4,381,805 - -3.5
4,381,899 - -1.6
4,381,899 - -3.0
4,381,899 - -0.2
4,381,912 - -0.2
4,381,912 - -0.9
4,381,915 - -2.2
4,381,915 - -0.6
4,381,915 - -0.6
4,382,003 + -0.6
4,383,837 - -2.2
4,383,837 - -1.2
4,383,837 - -2.6
4,383,837 - +0.4
4,383,841 - -0.6
4,383,841 - +0.4
4,383,841 - -1.9
4,383,841 - -1.6
4,383,841 - -2.2
4,383,896 + +0.4

Or see this region's nucleotide sequence