Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20045

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS20040 and AMB_RS20045 are separated by 18 nucleotidesAMB_RS20045 and AMB_RS20050 are separated by 135 nucleotides AMB_RS20040: AMB_RS20040 - 2-oxoglutarate dehydrogenase E1 component, at 4,369,075 to 4,372,041 _RS20040 AMB_RS20045: AMB_RS20045 - dihydrolipoyllysine-residue succinyltransferase, at 4,372,060 to 4,373,244 _RS20045 AMB_RS20050: AMB_RS20050 - dihydrolipoyl dehydrogenase, at 4,373,380 to 4,374,789 _RS20050 Position (kb) 4372 4373 4374Strain fitness (log2 ratio) -2 -1 0 1at 4372.039 kb on + strandat 4372.039 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
4,372,039 + -2.0
4,372,039 + -0.1

Or see this region's nucleotide sequence