Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20000

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19990 and AMB_RS19995 are separated by 14 nucleotidesAMB_RS19995 and AMB_RS20000 are separated by 4 nucleotidesAMB_RS20000 and AMB_RS20005 are separated by 21 nucleotidesAMB_RS20005 and AMB_RS20010 are separated by 82 nucleotides AMB_RS19990: AMB_RS19990 - succinate dehydrogenase, cytochrome b556 subunit, at 4,359,363 to 4,359,740 _RS19990 AMB_RS19995: AMB_RS19995 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 4,359,755 to 4,360,135 _RS19995 AMB_RS20000: AMB_RS20000 - succinate dehydrogenase flavoprotein subunit, at 4,360,140 to 4,361,921 _RS20000 AMB_RS20005: AMB_RS20005 - succinate dehydrogenase iron-sulfur subunit, at 4,361,943 to 4,362,722 _RS20005 AMB_RS20010: AMB_RS20010 - hypothetical protein, at 4,362,805 to 4,363,209 _RS20010 Position (kb) 4360 4361 4362Strain fitness (log2 ratio) -2 -1 0 1at 4359.292 kb on + strandat 4361.919 kb on + strandat 4361.919 kb on + strandat 4361.919 kb on + strandat 4362.806 kb on + strandat 4362.807 kb on - strandat 4362.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,359,292 + -0.6
4,361,919 + +0.4
4,361,919 + +0.4
4,361,919 + +0.4
4,362,806 + +0.4
4,362,807 - -1.9
4,362,807 - -0.6

Or see this region's nucleotide sequence