Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19850

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19840 and AMB_RS19845 are separated by 10 nucleotidesAMB_RS19845 and AMB_RS19850 are separated by 12 nucleotidesAMB_RS19850 and AMB_RS19855 are separated by 12 nucleotides AMB_RS19840: AMB_RS19840 - hypothetical protein, at 4,333,345 to 4,334,004 _RS19840 AMB_RS19845: AMB_RS19845 - hypothetical protein, at 4,334,015 to 4,334,362 _RS19845 AMB_RS19850: AMB_RS19850 - hypothetical protein, at 4,334,375 to 4,334,668 _RS19850 AMB_RS19855: AMB_RS19855 - PhoH family protein, at 4,334,681 to 4,335,520 _RS19855 Position (kb) 4334 4335Strain fitness (log2 ratio) -3 -2 -1 0 1at 4333.699 kb on + strand, within AMB_RS19840at 4333.699 kb on + strand, within AMB_RS19840at 4333.699 kb on + strand, within AMB_RS19840at 4333.699 kb on + strand, within AMB_RS19840at 4333.700 kb on - strand, within AMB_RS19840at 4333.700 kb on - strand, within AMB_RS19840at 4333.700 kb on - strand, within AMB_RS19840at 4333.700 kb on - strand, within AMB_RS19840at 4333.701 kb on + strand, within AMB_RS19840at 4333.701 kb on + strand, within AMB_RS19840at 4333.702 kb on - strand, within AMB_RS19840at 4334.213 kb on + strand, within AMB_RS19845at 4334.213 kb on + strand, within AMB_RS19845at 4334.213 kb on + strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.214 kb on - strand, within AMB_RS19845at 4334.361 kb on - strandat 4334.609 kb on + strand, within AMB_RS19850at 4334.609 kb on + strand, within AMB_RS19850at 4334.610 kb on - strand, within AMB_RS19850at 4334.610 kb on - strand, within AMB_RS19850at 4334.610 kb on - strand, within AMB_RS19850at 4334.895 kb on + strand, within AMB_RS19855at 4334.895 kb on + strand, within AMB_RS19855at 4334.895 kb on + strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.896 kb on - strand, within AMB_RS19855at 4334.956 kb on + strand, within AMB_RS19855at 4334.956 kb on + strand, within AMB_RS19855at 4334.956 kb on + strand, within AMB_RS19855at 4334.957 kb on - strand, within AMB_RS19855at 4334.957 kb on - strand, within AMB_RS19855at 4334.957 kb on - strand, within AMB_RS19855at 4334.957 kb on - strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.958 kb on + strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4334.959 kb on - strand, within AMB_RS19855at 4335.042 kb on + strand, within AMB_RS19855at 4335.057 kb on + strand, within AMB_RS19855at 4335.192 kb on + strand, within AMB_RS19855at 4335.192 kb on + strand, within AMB_RS19855at 4335.192 kb on + strand, within AMB_RS19855at 4335.192 kb on + strand, within AMB_RS19855at 4335.192 kb on + strand, within AMB_RS19855at 4335.193 kb on - strand, within AMB_RS19855at 4335.193 kb on - strand, within AMB_RS19855at 4335.193 kb on - strand, within AMB_RS19855at 4335.300 kb on + strand, within AMB_RS19855at 4335.300 kb on + strand, within AMB_RS19855at 4335.300 kb on + strand, within AMB_RS19855at 4335.300 kb on + strand, within AMB_RS19855at 4335.300 kb on + strand, within AMB_RS19855at 4335.300 kb on + strand, within AMB_RS19855at 4335.300 kb on + strand, within AMB_RS19855at 4335.300 kb on + strand, within AMB_RS19855at 4335.301 kb on - strand, within AMB_RS19855at 4335.301 kb on - strand, within AMB_RS19855at 4335.301 kb on - strand, within AMB_RS19855at 4335.360 kb on + strand, within AMB_RS19855at 4335.361 kb on - strand, within AMB_RS19855at 4335.619 kb on + strandat 4335.620 kb on - strandat 4335.620 kb on - strandat 4335.620 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,333,699 + AMB_RS19840 0.54 +0.4
4,333,699 + AMB_RS19840 0.54 -1.2
4,333,699 + AMB_RS19840 0.54 +0.4
4,333,699 + AMB_RS19840 0.54 -0.2
4,333,700 - AMB_RS19840 0.54 -2.6
4,333,700 - AMB_RS19840 0.54 -1.6
4,333,700 - AMB_RS19840 0.54 +0.4
4,333,700 - AMB_RS19840 0.54 -0.2
4,333,701 + AMB_RS19840 0.54 -1.9
4,333,701 + AMB_RS19840 0.54 -2.2
4,333,702 - AMB_RS19840 0.54 -1.2
4,334,213 + AMB_RS19845 0.57 -0.6
4,334,213 + AMB_RS19845 0.57 -0.6
4,334,213 + AMB_RS19845 0.57 +0.4
4,334,214 - AMB_RS19845 0.57 -0.1
4,334,214 - AMB_RS19845 0.57 -1.9
4,334,214 - AMB_RS19845 0.57 -1.2
4,334,214 - AMB_RS19845 0.57 +0.4
4,334,214 - AMB_RS19845 0.57 -0.6
4,334,361 - -0.6
4,334,609 + AMB_RS19850 0.80 +0.4
4,334,609 + AMB_RS19850 0.80 -1.2
4,334,610 - AMB_RS19850 0.80 -3.4
4,334,610 - AMB_RS19850 0.80 -1.2
4,334,610 - AMB_RS19850 0.80 -1.9
4,334,895 + AMB_RS19855 0.25 -0.6
4,334,895 + AMB_RS19855 0.25 -1.4
4,334,895 + AMB_RS19855 0.25 -0.2
4,334,896 - AMB_RS19855 0.26 -1.9
4,334,896 - AMB_RS19855 0.26 -2.4
4,334,896 - AMB_RS19855 0.26 +0.4
4,334,896 - AMB_RS19855 0.26 -2.4
4,334,896 - AMB_RS19855 0.26 +0.4
4,334,896 - AMB_RS19855 0.26 -2.8
4,334,896 - AMB_RS19855 0.26 +0.4
4,334,896 - AMB_RS19855 0.26 -0.6
4,334,896 - AMB_RS19855 0.26 -2.4
4,334,896 - AMB_RS19855 0.26 -2.4
4,334,896 - AMB_RS19855 0.26 +0.4
4,334,896 - AMB_RS19855 0.26 -1.9
4,334,956 + AMB_RS19855 0.33 +0.4
4,334,956 + AMB_RS19855 0.33 -1.6
4,334,956 + AMB_RS19855 0.33 +1.4
4,334,957 - AMB_RS19855 0.33 -1.2
4,334,957 - AMB_RS19855 0.33 -3.0
4,334,957 - AMB_RS19855 0.33 +1.4
4,334,957 - AMB_RS19855 0.33 -3.3
4,334,958 + AMB_RS19855 0.33 -2.9
4,334,958 + AMB_RS19855 0.33 +1.4
4,334,958 + AMB_RS19855 0.33 +0.4
4,334,958 + AMB_RS19855 0.33 -1.6
4,334,958 + AMB_RS19855 0.33 +1.4
4,334,959 - AMB_RS19855 0.33 -1.6
4,334,959 - AMB_RS19855 0.33 +0.4
4,334,959 - AMB_RS19855 0.33 +0.4
4,334,959 - AMB_RS19855 0.33 -1.6
4,334,959 - AMB_RS19855 0.33 -1.6
4,335,042 + AMB_RS19855 0.43 +0.4
4,335,057 + AMB_RS19855 0.45 -1.6
4,335,192 + AMB_RS19855 0.61 -2.8
4,335,192 + AMB_RS19855 0.61 -0.0
4,335,192 + AMB_RS19855 0.61 -1.9
4,335,192 + AMB_RS19855 0.61 +0.4
4,335,192 + AMB_RS19855 0.61 -2.4
4,335,193 - AMB_RS19855 0.61 -1.6
4,335,193 - AMB_RS19855 0.61 -1.9
4,335,193 - AMB_RS19855 0.61 -0.6
4,335,300 + AMB_RS19855 0.74 -0.6
4,335,300 + AMB_RS19855 0.74 -2.4
4,335,300 + AMB_RS19855 0.74 -1.2
4,335,300 + AMB_RS19855 0.74 -1.9
4,335,300 + AMB_RS19855 0.74 -1.2
4,335,300 + AMB_RS19855 0.74 -2.2
4,335,300 + AMB_RS19855 0.74 -1.2
4,335,300 + AMB_RS19855 0.74 -1.6
4,335,301 - AMB_RS19855 0.74 +0.4
4,335,301 - AMB_RS19855 0.74 -0.6
4,335,301 - AMB_RS19855 0.74 +0.4
4,335,360 + AMB_RS19855 0.81 +0.4
4,335,361 - AMB_RS19855 0.81 -3.2
4,335,619 + -0.6
4,335,620 - -0.2
4,335,620 - -2.3
4,335,620 - +0.4

Or see this region's nucleotide sequence