Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19310

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19300 and AMB_RS19305 are separated by 142 nucleotidesAMB_RS19305 and AMB_RS19310 are separated by 155 nucleotidesAMB_RS19310 and AMB_RS19315 are separated by 58 nucleotides AMB_RS19300: AMB_RS19300 - threonine-phosphate decarboxylase, at 4,211,663 to 4,212,652 _RS19300 AMB_RS19305: AMB_RS19305 - hypothetical protein, at 4,212,795 to 4,213,211 _RS19305 AMB_RS19310: AMB_RS19310 - hypothetical protein, at 4,213,367 to 4,213,741 _RS19310 AMB_RS19315: AMB_RS19315 - acyl-CoA synthetase, at 4,213,800 to 4,215,449 _RS19315 Position (kb) 4213 4214Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4212.660 kb on + strandat 4212.733 kb on + strandat 4212.733 kb on + strandat 4212.734 kb on - strandat 4212.734 kb on - strandat 4212.915 kb on - strand, within AMB_RS19305at 4212.961 kb on + strand, within AMB_RS19305at 4212.961 kb on + strand, within AMB_RS19305at 4212.961 kb on + strand, within AMB_RS19305at 4212.961 kb on + strand, within AMB_RS19305at 4212.962 kb on - strand, within AMB_RS19305at 4212.988 kb on + strand, within AMB_RS19305at 4212.988 kb on + strand, within AMB_RS19305at 4213.079 kb on - strand, within AMB_RS19305at 4213.223 kb on - strandat 4213.236 kb on + strandat 4213.236 kb on + strandat 4213.237 kb on - strandat 4213.237 kb on - strandat 4213.237 kb on - strandat 4213.309 kb on + strandat 4213.310 kb on - strandat 4213.310 kb on - strandat 4213.506 kb on + strand, within AMB_RS19310at 4213.506 kb on + strand, within AMB_RS19310at 4213.506 kb on + strand, within AMB_RS19310at 4213.905 kb on + strandat 4213.906 kb on - strandat 4213.906 kb on - strandat 4214.176 kb on + strand, within AMB_RS19315at 4214.177 kb on - strand, within AMB_RS19315at 4214.177 kb on - strand, within AMB_RS19315at 4214.177 kb on - strand, within AMB_RS19315at 4214.177 kb on - strand, within AMB_RS19315at 4214.261 kb on - strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.603 kb on - strand, within AMB_RS19315at 4214.603 kb on - strand, within AMB_RS19315at 4214.603 kb on - strand, within AMB_RS19315at 4214.603 kb on - strand, within AMB_RS19315

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,212,660 + -3.8
4,212,733 + -0.6
4,212,733 + -1.6
4,212,734 - -2.8
4,212,734 - +0.7
4,212,915 - AMB_RS19305 0.29 -2.6
4,212,961 + AMB_RS19305 0.40 -0.6
4,212,961 + AMB_RS19305 0.40 +0.4
4,212,961 + AMB_RS19305 0.40 -0.1
4,212,961 + AMB_RS19305 0.40 +0.4
4,212,962 - AMB_RS19305 0.40 -2.2
4,212,988 + AMB_RS19305 0.46 +0.4
4,212,988 + AMB_RS19305 0.46 -0.4
4,213,079 - AMB_RS19305 0.68 -1.4
4,213,223 - +0.4
4,213,236 + -1.2
4,213,236 + -2.4
4,213,237 - +1.4
4,213,237 - +0.4
4,213,237 - -0.5
4,213,309 + +0.1
4,213,310 - +1.4
4,213,310 - -0.6
4,213,506 + AMB_RS19310 0.37 -1.9
4,213,506 + AMB_RS19310 0.37 -1.6
4,213,506 + AMB_RS19310 0.37 +0.4
4,213,905 + -1.6
4,213,906 - +0.4
4,213,906 - -0.3
4,214,176 + AMB_RS19315 0.23 -2.7
4,214,177 - AMB_RS19315 0.23 +0.4
4,214,177 - AMB_RS19315 0.23 -0.1
4,214,177 - AMB_RS19315 0.23 +0.4
4,214,177 - AMB_RS19315 0.23 -1.2
4,214,261 - AMB_RS19315 0.28 -1.2
4,214,602 + AMB_RS19315 0.49 -1.6
4,214,602 + AMB_RS19315 0.49 +0.4
4,214,602 + AMB_RS19315 0.49 -0.6
4,214,602 + AMB_RS19315 0.49 -1.2
4,214,602 + AMB_RS19315 0.49 -1.4
4,214,602 + AMB_RS19315 0.49 -1.2
4,214,602 + AMB_RS19315 0.49 -1.2
4,214,602 + AMB_RS19315 0.49 -1.9
4,214,602 + AMB_RS19315 0.49 -3.6
4,214,602 + AMB_RS19315 0.49 -0.6
4,214,603 - AMB_RS19315 0.49 -3.9
4,214,603 - AMB_RS19315 0.49 -1.2
4,214,603 - AMB_RS19315 0.49 -0.2
4,214,603 - AMB_RS19315 0.49 -2.4

Or see this region's nucleotide sequence