Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19160

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS19155 and AMB_RS19160 are separated by 128 nucleotidesAMB_RS19160 and AMB_RS19165 are separated by 55 nucleotidesAMB_RS19165 and AMB_RS19170 are separated by 243 nucleotides AMB_RS19155: AMB_RS19155 - amino acid ABC transporter substrate-binding protein, at 4,164,720 to 4,165,628 _RS19155 AMB_RS19160: AMB_RS19160 - methyltransferase domain-containing protein, at 4,165,757 to 4,167,079 _RS19160 AMB_RS19165: AMB_RS19165 - hypothetical protein, at 4,167,135 to 4,167,317 _RS19165 AMB_RS19170: AMB_RS19170 - 3-beta hydroxysteroid dehydrogenase, at 4,167,561 to 4,168,631 _RS19170 Position (kb) 4165 4166 4167 4168Strain fitness (log2 ratio) -3 -2 -1 0 1at 4164.850 kb on + strand, within AMB_RS19155at 4164.851 kb on - strand, within AMB_RS19155at 4165.142 kb on + strand, within AMB_RS19155at 4165.143 kb on - strand, within AMB_RS19155at 4165.208 kb on + strand, within AMB_RS19155at 4165.209 kb on - strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.298 kb on + strand, within AMB_RS19155at 4165.299 kb on - strand, within AMB_RS19155at 4165.587 kb on + strandat 4165.587 kb on + strandat 4165.587 kb on + strandat 4165.643 kb on - strandat 4165.648 kb on + strandat 4165.649 kb on - strandat 4165.662 kb on + strandat 4165.663 kb on - strandat 4165.663 kb on - strandat 4165.666 kb on + strandat 4165.666 kb on + strandat 4165.691 kb on + strandat 4165.692 kb on - strandat 4165.712 kb on - strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.749 kb on - strandat 4165.749 kb on - strandat 4165.749 kb on - strandat 4165.749 kb on - strandat 4165.757 kb on - strandat 4165.848 kb on - strandat 4165.848 kb on - strandat 4165.866 kb on - strandat 4165.866 kb on - strandat 4166.864 kb on + strand, within AMB_RS19160at 4166.864 kb on + strand, within AMB_RS19160at 4166.864 kb on + strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4167.077 kb on + strandat 4167.352 kb on + strandat 4167.353 kb on - strandat 4167.353 kb on - strandat 4167.439 kb on + strandat 4167.439 kb on + strandat 4167.440 kb on - strandat 4167.465 kb on - strandat 4167.473 kb on + strandat 4167.474 kb on - strandat 4167.474 kb on - strandat 4167.484 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.828 kb on + strand, within AMB_RS19170at 4167.829 kb on - strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.879 kb on - strand, within AMB_RS19170at 4167.891 kb on + strand, within AMB_RS19170at 4167.892 kb on - strand, within AMB_RS19170at 4167.892 kb on - strand, within AMB_RS19170at 4167.942 kb on + strand, within AMB_RS19170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
4,164,850 + AMB_RS19155 0.14 -1.7
4,164,851 - AMB_RS19155 0.14 +0.4
4,165,142 + AMB_RS19155 0.46 -0.6
4,165,143 - AMB_RS19155 0.47 +0.4
4,165,208 + AMB_RS19155 0.54 -2.9
4,165,209 - AMB_RS19155 0.54 +0.4
4,165,255 + AMB_RS19155 0.59 -3.4
4,165,255 + AMB_RS19155 0.59 -2.3
4,165,255 + AMB_RS19155 0.59 +0.4
4,165,255 + AMB_RS19155 0.59 +0.4
4,165,255 + AMB_RS19155 0.59 +0.4
4,165,255 + AMB_RS19155 0.59 -0.2
4,165,255 + AMB_RS19155 0.59 -1.1
4,165,256 - AMB_RS19155 0.59 -0.6
4,165,256 - AMB_RS19155 0.59 -1.1
4,165,256 - AMB_RS19155 0.59 +0.4
4,165,256 - AMB_RS19155 0.59 -2.4
4,165,256 - AMB_RS19155 0.59 -0.1
4,165,256 - AMB_RS19155 0.59 -0.0
4,165,298 + AMB_RS19155 0.64 +0.4
4,165,299 - AMB_RS19155 0.64 -1.9
4,165,587 + +0.1
4,165,587 + -0.3
4,165,587 + -0.3
4,165,643 - -0.3
4,165,648 + +0.1
4,165,649 - -0.2
4,165,662 + -1.1
4,165,663 - +1.4
4,165,663 - -0.6
4,165,666 + -0.4
4,165,666 + -1.1
4,165,691 + -0.6
4,165,692 - +0.4
4,165,712 - +0.4
4,165,748 + -1.6
4,165,748 + -1.1
4,165,748 + +0.4
4,165,748 + -1.1
4,165,748 + +0.4
4,165,748 + -2.7
4,165,749 - -1.0
4,165,749 - -0.6
4,165,749 - -1.1
4,165,749 - +0.4
4,165,757 - -0.6
4,165,848 - -0.6
4,165,848 - -2.7
4,165,866 - -1.1
4,165,866 - -1.1
4,166,864 + AMB_RS19160 0.84 +0.4
4,166,864 + AMB_RS19160 0.84 -0.1
4,166,864 + AMB_RS19160 0.84 +0.4
4,166,865 - AMB_RS19160 0.84 -1.9
4,166,865 - AMB_RS19160 0.84 -0.6
4,166,865 - AMB_RS19160 0.84 -0.6
4,167,077 + +0.4
4,167,352 + +0.4
4,167,353 - -0.5
4,167,353 - -1.6
4,167,439 + -1.1
4,167,439 + -1.1
4,167,440 - -2.4
4,167,465 - -1.9
4,167,473 + +0.4
4,167,474 - -1.9
4,167,474 - -2.7
4,167,484 + -2.0
4,167,501 + +0.4
4,167,501 + +0.4
4,167,501 + -2.1
4,167,501 + +0.4
4,167,501 + -0.6
4,167,501 + +0.5
4,167,502 - -1.6
4,167,502 - -0.1
4,167,502 - -1.1
4,167,502 - +0.5
4,167,502 - -0.6
4,167,828 + AMB_RS19170 0.25 -0.7
4,167,829 - AMB_RS19170 0.25 +0.4
4,167,846 + AMB_RS19170 0.27 -0.6
4,167,846 + AMB_RS19170 0.27 -2.7
4,167,846 + AMB_RS19170 0.27 -1.6
4,167,846 + AMB_RS19170 0.27 -1.1
4,167,846 + AMB_RS19170 0.27 -0.6
4,167,847 - AMB_RS19170 0.27 -1.6
4,167,847 - AMB_RS19170 0.27 -0.6
4,167,847 - AMB_RS19170 0.27 -0.6
4,167,847 - AMB_RS19170 0.27 -0.1
4,167,847 - AMB_RS19170 0.27 -0.6
4,167,847 - AMB_RS19170 0.27 -1.1
4,167,847 - AMB_RS19170 0.27 -0.6
4,167,847 - AMB_RS19170 0.27 -0.6
4,167,879 - AMB_RS19170 0.30 -1.6
4,167,891 + AMB_RS19170 0.31 -2.5
4,167,892 - AMB_RS19170 0.31 -1.9
4,167,892 - AMB_RS19170 0.31 -0.6
4,167,942 + AMB_RS19170 0.36 +0.4

Or see this region's nucleotide sequence