Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19150

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19140 and AMB_RS23615 are separated by 7 nucleotidesAMB_RS23615 and AMB_RS19150 are separated by 191 nucleotidesAMB_RS19150 and AMB_RS19155 are separated by 34 nucleotides AMB_RS19140: AMB_RS19140 - 23S rRNA methyltransferase, at 4,161,842 to 4,162,576 _RS19140 AMB_RS23615: AMB_RS23615 - host attachment protein, at 4,162,584 to 4,163,033 _RS23615 AMB_RS19150: AMB_RS19150 - IMP dehydrogenase, at 4,163,225 to 4,164,685 _RS19150 AMB_RS19155: AMB_RS19155 - amino acid ABC transporter substrate-binding protein, at 4,164,720 to 4,165,628 _RS19155 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.692 kb on - strand, within AMB_RS23615at 4162.692 kb on - strand, within AMB_RS23615at 4162.692 kb on - strand, within AMB_RS23615at 4162.837 kb on + strand, within AMB_RS23615at 4162.838 kb on - strand, within AMB_RS23615at 4162.933 kb on + strand, within AMB_RS23615at 4162.933 kb on + strand, within AMB_RS23615at 4162.933 kb on + strand, within AMB_RS23615at 4162.933 kb on + strand, within AMB_RS23615at 4162.933 kb on + strand, within AMB_RS23615at 4162.933 kb on + strand, within AMB_RS23615at 4162.934 kb on - strand, within AMB_RS23615at 4162.934 kb on - strand, within AMB_RS23615at 4162.934 kb on - strand, within AMB_RS23615at 4162.934 kb on - strand, within AMB_RS23615at 4162.934 kb on - strand, within AMB_RS23615at 4162.934 kb on - strand, within AMB_RS23615at 4163.083 kb on + strandat 4163.084 kb on - strandat 4163.084 kb on - strandat 4163.084 kb on - strandat 4163.084 kb on - strandat 4163.085 kb on + strandat 4163.085 kb on + strandat 4163.086 kb on - strandat 4163.086 kb on - strandat 4164.671 kb on + strandat 4164.672 kb on - strandat 4164.672 kb on - strandat 4164.683 kb on + strandat 4164.684 kb on - strandat 4164.722 kb on - strandat 4164.850 kb on + strand, within AMB_RS19155at 4164.851 kb on - strand, within AMB_RS19155at 4165.142 kb on + strand, within AMB_RS19155at 4165.143 kb on - strand, within AMB_RS19155at 4165.208 kb on + strand, within AMB_RS19155at 4165.209 kb on - strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.298 kb on + strand, within AMB_RS19155at 4165.299 kb on - strand, within AMB_RS19155at 4165.587 kb on + strandat 4165.587 kb on + strandat 4165.587 kb on + strandat 4165.643 kb on - strandat 4165.648 kb on + strandat 4165.649 kb on - strandat 4165.662 kb on + strandat 4165.663 kb on - strandat 4165.663 kb on - strandat 4165.666 kb on + strandat 4165.666 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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4,162,691 + AMB_RS23615 0.24 -0.6
4,162,691 + AMB_RS23615 0.24 +0.4
4,162,691 + AMB_RS23615 0.24 -0.6
4,162,691 + AMB_RS23615 0.24 -0.6
4,162,691 + AMB_RS23615 0.24 -1.6
4,162,691 + AMB_RS23615 0.24 -0.6
4,162,691 + AMB_RS23615 0.24 -0.6
4,162,691 + AMB_RS23615 0.24 -2.6
4,162,691 + AMB_RS23615 0.24 -2.9
4,162,692 - AMB_RS23615 0.24 -3.9
4,162,692 - AMB_RS23615 0.24 -0.6
4,162,692 - AMB_RS23615 0.24 -0.3
4,162,837 + AMB_RS23615 0.56 -1.6
4,162,838 - AMB_RS23615 0.56 -1.6
4,162,933 + AMB_RS23615 0.78 +0.4
4,162,933 + AMB_RS23615 0.78 -0.2
4,162,933 + AMB_RS23615 0.78 -1.6
4,162,933 + AMB_RS23615 0.78 +0.4
4,162,933 + AMB_RS23615 0.78 +0.4
4,162,933 + AMB_RS23615 0.78 +0.4
4,162,934 - AMB_RS23615 0.78 -1.9
4,162,934 - AMB_RS23615 0.78 -0.2
4,162,934 - AMB_RS23615 0.78 +0.4
4,162,934 - AMB_RS23615 0.78 -0.2
4,162,934 - AMB_RS23615 0.78 +0.4
4,162,934 - AMB_RS23615 0.78 -1.9
4,163,083 + -2.7
4,163,084 - +0.4
4,163,084 - +0.4
4,163,084 - -0.0
4,163,084 - -1.2
4,163,085 + +0.4
4,163,085 + -0.6
4,163,086 - -1.6
4,163,086 - -1.2
4,164,671 + +0.4
4,164,672 - -1.9
4,164,672 - -0.1
4,164,683 + -0.5
4,164,684 - +0.4
4,164,722 - -1.4
4,164,850 + AMB_RS19155 0.14 -1.7
4,164,851 - AMB_RS19155 0.14 +0.4
4,165,142 + AMB_RS19155 0.46 -0.6
4,165,143 - AMB_RS19155 0.47 +0.4
4,165,208 + AMB_RS19155 0.54 -2.9
4,165,209 - AMB_RS19155 0.54 +0.4
4,165,255 + AMB_RS19155 0.59 -3.4
4,165,255 + AMB_RS19155 0.59 -2.3
4,165,255 + AMB_RS19155 0.59 +0.4
4,165,255 + AMB_RS19155 0.59 +0.4
4,165,255 + AMB_RS19155 0.59 +0.4
4,165,255 + AMB_RS19155 0.59 -0.2
4,165,255 + AMB_RS19155 0.59 -1.1
4,165,256 - AMB_RS19155 0.59 -0.6
4,165,256 - AMB_RS19155 0.59 -1.1
4,165,256 - AMB_RS19155 0.59 +0.4
4,165,256 - AMB_RS19155 0.59 -2.4
4,165,256 - AMB_RS19155 0.59 -0.1
4,165,256 - AMB_RS19155 0.59 -0.0
4,165,298 + AMB_RS19155 0.64 +0.4
4,165,299 - AMB_RS19155 0.64 -1.9
4,165,587 + +0.1
4,165,587 + -0.3
4,165,587 + -0.3
4,165,643 - -0.3
4,165,648 + +0.1
4,165,649 - -0.2
4,165,662 + -1.1
4,165,663 - +1.4
4,165,663 - -0.6
4,165,666 + -0.4
4,165,666 + -1.1

Or see this region's nucleotide sequence