Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17775

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS17770 and AMB_RS17775 are separated by 191 nucleotidesAMB_RS17775 and AMB_RS17780 overlap by 4 nucleotidesAMB_RS17780 and AMB_RS17785 are separated by 12 nucleotides AMB_RS17770: AMB_RS17770 - rod shape-determining protein, at 3,861,214 to 3,862,254 _RS17770 AMB_RS17775: AMB_RS17775 - rod shape-determining protein MreC, at 3,862,446 to 3,863,333 _RS17775 AMB_RS17780: AMB_RS17780 - rod shape-determining protein MreD, at 3,863,330 to 3,863,845 _RS17780 AMB_RS17785: AMB_RS17785 - penicillin-binding protein 2, at 3,863,858 to 3,865,741 _RS17785 Position (kb) 3862 3863 3864Strain fitness (log2 ratio) -3 -2 -1 0 1at 3862.266 kb on + strandat 3862.266 kb on + strandat 3862.266 kb on + strandat 3862.294 kb on + strandat 3862.355 kb on + strandat 3862.377 kb on + strandat 3862.377 kb on + strandat 3862.383 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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3,862,266 + +0.5
3,862,266 + -1.1
3,862,266 + -0.4
3,862,294 + -1.5
3,862,355 + +0.5
3,862,377 + +0.5
3,862,377 + -2.9
3,862,383 + -1.5

Or see this region's nucleotide sequence