Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17010

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS17005 and AMB_RS17010 are separated by 10 nucleotidesAMB_RS17010 and AMB_RS17015 are separated by 161 nucleotidesAMB_RS17015 and AMB_RS17020 overlap by 4 nucleotides AMB_RS17005: AMB_RS17005 - hypothetical protein, at 3,651,393 to 3,653,096 _RS17005 AMB_RS17010: AMB_RS17010 - ion transporter, at 3,653,107 to 3,654,150 _RS17010 AMB_RS17015: AMB_RS17015 - uroporphyrinogen-III C-methyltransferase, at 3,654,312 to 3,655,082 _RS17015 AMB_RS17020: AMB_RS17020 - hypothetical protein, at 3,655,079 to 3,655,840 _RS17020 Position (kb) 3653 3654 3655Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3652.383 kb on + strand, within AMB_RS17005at 3652.383 kb on + strand, within AMB_RS17005at 3652.497 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.593 kb on + strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.594 kb on - strand, within AMB_RS17005at 3652.595 kb on + strand, within AMB_RS17005at 3652.595 kb on + strand, within AMB_RS17005at 3652.595 kb on + strand, within AMB_RS17005at 3652.662 kb on + strand, within AMB_RS17005at 3652.662 kb on + strand, within AMB_RS17005at 3652.662 kb on + strand, within AMB_RS17005at 3652.663 kb on - strand, within AMB_RS17005at 3652.663 kb on - strand, within AMB_RS17005at 3652.831 kb on - strand, within AMB_RS17005at 3653.010 kb on - strandat 3653.394 kb on + strand, within AMB_RS17010at 3653.394 kb on + strand, within AMB_RS17010at 3653.394 kb on + strand, within AMB_RS17010at 3653.395 kb on - strand, within AMB_RS17010at 3653.500 kb on - strand, within AMB_RS17010at 3653.500 kb on - strand, within AMB_RS17010at 3653.540 kb on + strand, within AMB_RS17010at 3653.651 kb on + strand, within AMB_RS17010at 3653.855 kb on + strand, within AMB_RS17010at 3653.856 kb on - strand, within AMB_RS17010at 3653.856 kb on - strand, within AMB_RS17010at 3653.856 kb on - strand, within AMB_RS17010at 3653.856 kb on - strand, within AMB_RS17010at 3654.041 kb on + strand, within AMB_RS17010at 3654.042 kb on - strand, within AMB_RS17010at 3654.189 kb on + strandat 3654.190 kb on - strandat 3654.332 kb on + strandat 3654.843 kb on + strand, within AMB_RS17015

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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3,652,383 + AMB_RS17005 0.58 +0.4
3,652,383 + AMB_RS17005 0.58 -0.2
3,652,497 + AMB_RS17005 0.65 +0.4
3,652,593 + AMB_RS17005 0.70 -1.6
3,652,593 + AMB_RS17005 0.70 -1.6
3,652,593 + AMB_RS17005 0.70 -1.6
3,652,593 + AMB_RS17005 0.70 +0.4
3,652,593 + AMB_RS17005 0.70 -1.9
3,652,593 + AMB_RS17005 0.70 +0.4
3,652,593 + AMB_RS17005 0.70 -1.6
3,652,593 + AMB_RS17005 0.70 -0.7
3,652,593 + AMB_RS17005 0.70 -5.5
3,652,594 - AMB_RS17005 0.70 -2.6
3,652,594 - AMB_RS17005 0.70 -0.3
3,652,594 - AMB_RS17005 0.70 +0.4
3,652,594 - AMB_RS17005 0.70 -2.2
3,652,594 - AMB_RS17005 0.70 -0.6
3,652,594 - AMB_RS17005 0.70 +0.4
3,652,594 - AMB_RS17005 0.70 +0.4
3,652,594 - AMB_RS17005 0.70 -1.2
3,652,594 - AMB_RS17005 0.70 -1.2
3,652,594 - AMB_RS17005 0.70 -1.2
3,652,595 + AMB_RS17005 0.71 -0.0
3,652,595 + AMB_RS17005 0.71 -0.3
3,652,595 + AMB_RS17005 0.71 +0.4
3,652,662 + AMB_RS17005 0.74 -0.6
3,652,662 + AMB_RS17005 0.74 -0.7
3,652,662 + AMB_RS17005 0.74 -0.6
3,652,663 - AMB_RS17005 0.75 -1.2
3,652,663 - AMB_RS17005 0.75 -0.6
3,652,831 - AMB_RS17005 0.84 -0.2
3,653,010 - +0.4
3,653,394 + AMB_RS17010 0.27 -0.6
3,653,394 + AMB_RS17010 0.27 -0.6
3,653,394 + AMB_RS17010 0.27 -2.9
3,653,395 - AMB_RS17010 0.28 +0.4
3,653,500 - AMB_RS17010 0.38 -3.3
3,653,500 - AMB_RS17010 0.38 -2.6
3,653,540 + AMB_RS17010 0.41 -0.6
3,653,651 + AMB_RS17010 0.52 +0.4
3,653,855 + AMB_RS17010 0.72 -3.8
3,653,856 - AMB_RS17010 0.72 -1.6
3,653,856 - AMB_RS17010 0.72 -0.2
3,653,856 - AMB_RS17010 0.72 +0.4
3,653,856 - AMB_RS17010 0.72 +0.1
3,654,041 + AMB_RS17010 0.89 -3.6
3,654,042 - AMB_RS17010 0.90 -3.0
3,654,189 + -2.4
3,654,190 - +0.4
3,654,332 + +0.4
3,654,843 + AMB_RS17015 0.69 -1.2

Or see this region's nucleotide sequence