Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15855

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS15840 and AMB_RS15845 are separated by 7 nucleotidesAMB_RS15845 and AMB_RS15850 are separated by 18 nucleotidesAMB_RS15850 and AMB_RS15855 are separated by 129 nucleotidesAMB_RS15855 and AMB_RS15860 are separated by 73 nucleotidesAMB_RS15860 and AMB_RS15865 are separated by 103 nucleotidesAMB_RS15865 and AMB_RS15870 are separated by 115 nucleotides AMB_RS15840: AMB_RS15840 - transcription termination/antitermination protein NusG, at 3,396,478 to 3,397,011 _RS15840 AMB_RS15845: AMB_RS15845 - preprotein translocase subunit SecE, at 3,397,019 to 3,397,216 _RS15845 AMB_RS15850: AMB_RS15850 - tRNA-Trp, at 3,397,235 to 3,397,310 _RS15850 AMB_RS15855: AMB_RS15855 - elongation factor Tu, at 3,397,440 to 3,398,630 _RS15855 AMB_RS15860: AMB_RS15860 - tRNA-Gly, at 3,398,704 to 3,398,777 _RS15860 AMB_RS15865: AMB_RS15865 - tRNA-Tyr, at 3,398,881 to 3,398,966 _RS15865 AMB_RS15870: AMB_RS15870 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 3,399,082 to 3,399,885 _RS15870 Position (kb) 3397 3398 3399Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3399.056 kb on - strandat 3399.193 kb on + strand, within AMB_RS15870at 3399.193 kb on + strand, within AMB_RS15870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
3,399,056 - -3.9
3,399,193 + AMB_RS15870 0.14 +0.4
3,399,193 + AMB_RS15870 0.14 -1.2

Or see this region's nucleotide sequence