Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15650

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15640 and AMB_RS15645 are separated by 63 nucleotidesAMB_RS15645 and AMB_RS15650 are separated by 163 nucleotidesAMB_RS15650 and AMB_RS15655 are separated by 104 nucleotidesAMB_RS15655 and AMB_RS15660 are separated by 12 nucleotides AMB_RS15640: AMB_RS15640 - methyltransferase domain-containing protein, at 3,361,679 to 3,362,863 _RS15640 AMB_RS15645: AMB_RS15645 - 50S ribosomal protein L17, at 3,362,927 to 3,363,349 _RS15645 AMB_RS15650: AMB_RS15650 - DNA-directed RNA polymerase subunit alpha, at 3,363,513 to 3,364,529 _RS15650 AMB_RS15655: AMB_RS15655 - 30S ribosomal protein S11, at 3,364,634 to 3,365,029 _RS15655 AMB_RS15660: AMB_RS15660 - 30S ribosomal protein S13, at 3,365,042 to 3,365,419 _RS15660 Position (kb) 3363 3364 3365Strain fitness (log2 ratio) -2 -1 0 1at 3362.529 kb on + strand, within AMB_RS15640at 3362.530 kb on - strand, within AMB_RS15640at 3362.530 kb on - strand, within AMB_RS15640at 3362.607 kb on - strand, within AMB_RS15640at 3362.646 kb on + strand, within AMB_RS15640at 3362.646 kb on + strand, within AMB_RS15640at 3362.647 kb on - strand, within AMB_RS15640at 3362.765 kb on + strandat 3362.765 kb on + strandat 3362.765 kb on + strandat 3362.766 kb on - strandat 3362.766 kb on - strandat 3362.766 kb on - strandat 3362.820 kb on + strandat 3362.821 kb on - strandat 3363.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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3,362,529 + AMB_RS15640 0.72 -0.6
3,362,530 - AMB_RS15640 0.72 +0.4
3,362,530 - AMB_RS15640 0.72 -2.3
3,362,607 - AMB_RS15640 0.78 -2.6
3,362,646 + AMB_RS15640 0.82 +0.0
3,362,646 + AMB_RS15640 0.82 -1.8
3,362,647 - AMB_RS15640 0.82 -1.2
3,362,765 + -0.9
3,362,765 + -1.9
3,362,765 + +0.4
3,362,766 - -0.0
3,362,766 - -0.6
3,362,766 - -0.6
3,362,820 + -0.6
3,362,821 - -0.4
3,363,462 - +0.4

Or see this region's nucleotide sequence