Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS15640 and AMB_RS15645 are separated by 63 nucleotides AMB_RS15645 and AMB_RS15650 are separated by 163 nucleotides AMB_RS15650 and AMB_RS15655 are separated by 104 nucleotides AMB_RS15655 and AMB_RS15660 are separated by 12 nucleotides
AMB_RS15640: AMB_RS15640 - methyltransferase domain-containing protein, at 3,361,679 to 3,362,863
_RS15640
AMB_RS15645: AMB_RS15645 - 50S ribosomal protein L17, at 3,362,927 to 3,363,349
_RS15645
AMB_RS15650: AMB_RS15650 - DNA-directed RNA polymerase subunit alpha, at 3,363,513 to 3,364,529
_RS15650
AMB_RS15655: AMB_RS15655 - 30S ribosomal protein S11, at 3,364,634 to 3,365,029
_RS15655
AMB_RS15660: AMB_RS15660 - 30S ribosomal protein S13, at 3,365,042 to 3,365,419
_RS15660
Position (kb)
3363
3364
3365 Strain fitness (log2 ratio)
-2
-1
0
1 at 3362.529 kb on + strand, within AMB_RS15640 at 3362.530 kb on - strand, within AMB_RS15640 at 3362.530 kb on - strand, within AMB_RS15640 at 3362.607 kb on - strand, within AMB_RS15640 at 3362.646 kb on + strand, within AMB_RS15640 at 3362.646 kb on + strand, within AMB_RS15640 at 3362.647 kb on - strand, within AMB_RS15640 at 3362.765 kb on + strand at 3362.765 kb on + strand at 3362.765 kb on + strand at 3362.766 kb on - strand at 3362.766 kb on - strand at 3362.766 kb on - strand at 3362.820 kb on + strand at 3362.821 kb on - strand at 3363.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 3,362,529 + AMB_RS15640 0.72 -0.6 3,362,530 - AMB_RS15640 0.72 +0.4 3,362,530 - AMB_RS15640 0.72 -2.3 3,362,607 - AMB_RS15640 0.78 -2.6 3,362,646 + AMB_RS15640 0.82 +0.0 3,362,646 + AMB_RS15640 0.82 -1.8 3,362,647 - AMB_RS15640 0.82 -1.2 3,362,765 + -0.9 3,362,765 + -1.9 3,362,765 + +0.4 3,362,766 - -0.0 3,362,766 - -0.6 3,362,766 - -0.6 3,362,820 + -0.6 3,362,821 - -0.4 3,363,462 - +0.4
Or see this region's nucleotide sequence