Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15595

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15590 and AMB_RS15595 overlap by 35 nucleotidesAMB_RS15595 and AMB_RS15600 are separated by 174 nucleotides AMB_RS15590: AMB_RS15590 - YgiQ family radical SAM protein, at 3,347,095 to 3,349,186 _RS15590 AMB_RS15595: AMB_RS15595 - hypothetical protein, at 3,349,152 to 3,350,150 _RS15595 AMB_RS15600: AMB_RS15600 - membrane protein, at 3,350,325 to 3,352,916 _RS15600 Position (kb) 3349 3350 3351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3348.193 kb on - strand, within AMB_RS15590at 3348.217 kb on - strand, within AMB_RS15590at 3348.228 kb on + strand, within AMB_RS15590at 3348.228 kb on + strand, within AMB_RS15590at 3348.228 kb on + strand, within AMB_RS15590at 3348.228 kb on + strand, within AMB_RS15590at 3348.229 kb on - strand, within AMB_RS15590at 3348.229 kb on - strand, within AMB_RS15590at 3348.366 kb on + strand, within AMB_RS15590at 3348.366 kb on + strand, within AMB_RS15590at 3348.367 kb on - strand, within AMB_RS15590at 3348.367 kb on - strand, within AMB_RS15590at 3348.367 kb on - strand, within AMB_RS15590at 3348.367 kb on - strand, within AMB_RS15590at 3348.748 kb on - strand, within AMB_RS15590at 3348.748 kb on - strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.796 kb on + strand, within AMB_RS15590at 3348.797 kb on - strand, within AMB_RS15590at 3348.797 kb on - strand, within AMB_RS15590at 3348.797 kb on - strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.798 kb on + strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.799 kb on - strand, within AMB_RS15590at 3348.832 kb on + strand, within AMB_RS15590at 3348.832 kb on + strand, within AMB_RS15590at 3348.832 kb on + strand, within AMB_RS15590at 3348.832 kb on + strand, within AMB_RS15590at 3348.833 kb on - strand, within AMB_RS15590at 3348.833 kb on - strand, within AMB_RS15590at 3348.833 kb on - strand, within AMB_RS15590at 3348.833 kb on - strand, within AMB_RS15590at 3348.835 kb on - strand, within AMB_RS15590at 3348.835 kb on - strand, within AMB_RS15590at 3348.882 kb on - strand, within AMB_RS15590at 3348.882 kb on - strand, within AMB_RS15590at 3349.014 kb on + strandat 3349.014 kb on + strandat 3349.014 kb on + strandat 3349.014 kb on + strandat 3349.014 kb on + strandat 3349.015 kb on - strandat 3349.015 kb on - strandat 3349.015 kb on - strandat 3349.493 kb on - strand, within AMB_RS15595at 3350.160 kb on + strandat 3350.160 kb on + strandat 3350.261 kb on + strandat 3350.261 kb on + strandat 3350.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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3,348,193 - AMB_RS15590 0.52 -1.2
3,348,217 - AMB_RS15590 0.54 +1.4
3,348,228 + AMB_RS15590 0.54 -1.5
3,348,228 + AMB_RS15590 0.54 -0.6
3,348,228 + AMB_RS15590 0.54 +0.4
3,348,228 + AMB_RS15590 0.54 -0.6
3,348,229 - AMB_RS15590 0.54 +1.4
3,348,229 - AMB_RS15590 0.54 +0.4
3,348,366 + AMB_RS15590 0.61 -3.9
3,348,366 + AMB_RS15590 0.61 -0.6
3,348,367 - AMB_RS15590 0.61 -2.2
3,348,367 - AMB_RS15590 0.61 +0.4
3,348,367 - AMB_RS15590 0.61 +0.4
3,348,367 - AMB_RS15590 0.61 -0.6
3,348,748 - AMB_RS15590 0.79 -0.6
3,348,748 - AMB_RS15590 0.79 -0.6
3,348,796 + AMB_RS15590 0.81 +0.4
3,348,796 + AMB_RS15590 0.81 -1.2
3,348,796 + AMB_RS15590 0.81 +0.4
3,348,796 + AMB_RS15590 0.81 -1.6
3,348,796 + AMB_RS15590 0.81 +0.4
3,348,797 - AMB_RS15590 0.81 +0.4
3,348,797 - AMB_RS15590 0.81 +1.4
3,348,797 - AMB_RS15590 0.81 +0.4
3,348,798 + AMB_RS15590 0.81 -3.2
3,348,798 + AMB_RS15590 0.81 -1.2
3,348,798 + AMB_RS15590 0.81 -2.2
3,348,798 + AMB_RS15590 0.81 -0.6
3,348,798 + AMB_RS15590 0.81 -0.4
3,348,798 + AMB_RS15590 0.81 -0.0
3,348,798 + AMB_RS15590 0.81 -1.9
3,348,799 - AMB_RS15590 0.81 +0.4
3,348,799 - AMB_RS15590 0.81 -3.2
3,348,799 - AMB_RS15590 0.81 -2.4
3,348,799 - AMB_RS15590 0.81 +0.4
3,348,799 - AMB_RS15590 0.81 -0.6
3,348,799 - AMB_RS15590 0.81 +0.4
3,348,799 - AMB_RS15590 0.81 +0.4
3,348,832 + AMB_RS15590 0.83 +0.4
3,348,832 + AMB_RS15590 0.83 -0.9
3,348,832 + AMB_RS15590 0.83 -1.2
3,348,832 + AMB_RS15590 0.83 +0.4
3,348,833 - AMB_RS15590 0.83 -1.6
3,348,833 - AMB_RS15590 0.83 -1.2
3,348,833 - AMB_RS15590 0.83 -0.5
3,348,833 - AMB_RS15590 0.83 -0.6
3,348,835 - AMB_RS15590 0.83 +0.2
3,348,835 - AMB_RS15590 0.83 -0.6
3,348,882 - AMB_RS15590 0.85 +0.4
3,348,882 - AMB_RS15590 0.85 -0.6
3,349,014 + +2.4
3,349,014 + -1.2
3,349,014 + -1.2
3,349,014 + +0.4
3,349,014 + +0.4
3,349,015 - -0.6
3,349,015 - +0.4
3,349,015 - -3.0
3,349,493 - AMB_RS15595 0.34 -3.3
3,350,160 + -0.6
3,350,160 + -0.1
3,350,261 + -1.9
3,350,261 + -2.4
3,350,261 + -1.2

Or see this region's nucleotide sequence