Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15240

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15235 and AMB_RS15240 are separated by 18 nucleotidesAMB_RS15240 and AMB_RS15245 are separated by 40 nucleotidesAMB_RS15245 and AMB_RS15250 are separated by 36 nucleotidesAMB_RS15250 and AMB_RS15255 are separated by 80 nucleotides AMB_RS15235: AMB_RS15235 - Fe-S protein assembly chaperone HscA, at 3,266,640 to 3,268,532 _RS15235 AMB_RS15240: AMB_RS15240 - Fe-S protein assembly co-chaperone HscB, at 3,268,551 to 3,269,177 _RS15240 AMB_RS15245: AMB_RS15245 - iron-sulfur cluster assembly accessory protein, at 3,269,218 to 3,269,553 _RS15245 AMB_RS15250: AMB_RS15250 - Fe-S cluster assembly scaffold IscU, at 3,269,590 to 3,269,970 _RS15250 AMB_RS15255: AMB_RS15255 - IscS subfamily cysteine desulfurase, at 3,270,051 to 3,271,307 _RS15255 Position (kb) 3268 3269 3270Strain fitness (log2 ratio) -3 -2 -1 0 1at 3268.537 kb on - strandat 3268.553 kb on - strandat 3268.553 kb on - strandat 3269.205 kb on - strandat 3270.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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3,268,537 - -1.0
3,268,553 - -0.7
3,268,553 - -3.5
3,269,205 - -3.2
3,270,000 - -1.3

Or see this region's nucleotide sequence