Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15230

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15220 and AMB_RS15225 are separated by 15 nucleotidesAMB_RS15225 and AMB_RS15230 are separated by 13 nucleotidesAMB_RS15230 and AMB_RS15235 are separated by 20 nucleotides AMB_RS15220: AMB_RS15220 - DUF599 domain-containing protein, at 3,265,356 to 3,266,057 _RS15220 AMB_RS15225: AMB_RS15225 - Fe-S assembly protein IscX, at 3,266,073 to 3,266,267 _RS15225 AMB_RS15230: AMB_RS15230 - (2Fe-2S) ferredoxin, at 3,266,281 to 3,266,619 _RS15230 AMB_RS15235: AMB_RS15235 - Fe-S protein assembly chaperone HscA, at 3,266,640 to 3,268,532 _RS15235 Position (kb) 3266 3267Strain fitness (log2 ratio) -1 0 1at 3265.301 kb on - strandat 3265.418 kb on - strandat 3265.499 kb on - strand, within AMB_RS15220at 3265.898 kb on + strand, within AMB_RS15220at 3265.898 kb on + strand, within AMB_RS15220at 3265.947 kb on - strand, within AMB_RS15220at 3266.282 kb on + strandat 3266.635 kb on - strandat 3266.639 kb on - strandat 3266.639 kb on - strandat 3266.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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3,265,301 - -0.7
3,265,418 - +0.3
3,265,499 - AMB_RS15220 0.20 +0.3
3,265,898 + AMB_RS15220 0.77 -1.3
3,265,898 + AMB_RS15220 0.77 -0.9
3,265,947 - AMB_RS15220 0.84 -1.3
3,266,282 + -0.3
3,266,635 - -1.3
3,266,639 - -1.7
3,266,639 - -1.7
3,266,670 - -1.0

Or see this region's nucleotide sequence