Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14275

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14265 and AMB_RS14270 are separated by 183 nucleotidesAMB_RS14270 and AMB_RS14275 are separated by 46 nucleotidesAMB_RS14275 and AMB_RS23475 overlap by 101 nucleotidesAMB_RS23475 and AMB_RS14285 are separated by 165 nucleotides AMB_RS14265: AMB_RS14265 - aspartate--tRNA ligase, at 3,031,963 to 3,033,759 _RS14265 AMB_RS14270: AMB_RS14270 - response regulator, at 3,033,943 to 3,034,545 _RS14270 AMB_RS14275: AMB_RS14275 - ribonuclease D, at 3,034,592 to 3,035,785 _RS14275 AMB_RS23475: AMB_RS23475 - YkgJ family cysteine cluster protein, at 3,035,685 to 3,036,416 _RS23475 AMB_RS14285: AMB_RS14285 - YaiI/YqxD family protein, at 3,036,582 to 3,037,037 _RS14285 Position (kb) 3034 3035 3036Strain fitness (log2 ratio) -3 -2 -1 0 1at 3033.841 kb on - strandat 3033.845 kb on - strandat 3033.937 kb on + strandat 3033.937 kb on + strandat 3033.938 kb on - strandat 3033.938 kb on - strandat 3033.938 kb on - strandat 3034.006 kb on - strand, within AMB_RS14270at 3034.360 kb on + strand, within AMB_RS14270at 3034.360 kb on + strand, within AMB_RS14270at 3034.455 kb on - strand, within AMB_RS14270at 3034.496 kb on + strandat 3034.496 kb on + strandat 3034.578 kb on + strandat 3034.578 kb on + strandat 3034.578 kb on + strandat 3036.402 kb on - strandat 3036.402 kb on - strandat 3036.402 kb on - strandat 3036.492 kb on - strandat 3036.557 kb on + strandat 3036.558 kb on - strandat 3036.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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3,033,841 - -1.7
3,033,845 - -1.3
3,033,937 + -0.7
3,033,937 + -0.7
3,033,938 - -2.9
3,033,938 - -1.7
3,033,938 - -0.7
3,034,006 - AMB_RS14270 0.10 -0.6
3,034,360 + AMB_RS14270 0.69 +0.3
3,034,360 + AMB_RS14270 0.69 +0.3
3,034,455 - AMB_RS14270 0.85 -1.3
3,034,496 + -2.7
3,034,496 + +1.3
3,034,578 + -1.3
3,034,578 + -0.7
3,034,578 + -0.7
3,036,402 - -0.3
3,036,402 - +0.3
3,036,402 - -1.3
3,036,492 - -1.3
3,036,557 + -0.4
3,036,558 - +0.3
3,036,568 - +0.0

Or see this region's nucleotide sequence