Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS14265 and AMB_RS14270 are separated by 183 nucleotides AMB_RS14270 and AMB_RS14275 are separated by 46 nucleotides AMB_RS14275 and AMB_RS23475 overlap by 101 nucleotides AMB_RS23475 and AMB_RS14285 are separated by 165 nucleotides
AMB_RS14265: AMB_RS14265 - aspartate--tRNA ligase, at 3,031,963 to 3,033,759
_RS14265
AMB_RS14270: AMB_RS14270 - response regulator, at 3,033,943 to 3,034,545
_RS14270
AMB_RS14275: AMB_RS14275 - ribonuclease D, at 3,034,592 to 3,035,785
_RS14275
AMB_RS23475: AMB_RS23475 - YkgJ family cysteine cluster protein, at 3,035,685 to 3,036,416
_RS23475
AMB_RS14285: AMB_RS14285 - YaiI/YqxD family protein, at 3,036,582 to 3,037,037
_RS14285
Position (kb)
3034
3035
3036 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3033.841 kb on - strand at 3033.845 kb on - strand at 3033.937 kb on + strand at 3033.937 kb on + strand at 3033.938 kb on - strand at 3033.938 kb on - strand at 3033.938 kb on - strand at 3034.006 kb on - strand, within AMB_RS14270 at 3034.360 kb on + strand, within AMB_RS14270 at 3034.360 kb on + strand, within AMB_RS14270 at 3034.455 kb on - strand, within AMB_RS14270 at 3034.496 kb on + strand at 3034.496 kb on + strand at 3034.578 kb on + strand at 3034.578 kb on + strand at 3034.578 kb on + strand at 3036.402 kb on - strand at 3036.402 kb on - strand at 3036.402 kb on - strand at 3036.492 kb on - strand at 3036.557 kb on + strand at 3036.558 kb on - strand at 3036.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 3,033,841 - -1.7 3,033,845 - -1.3 3,033,937 + -0.7 3,033,937 + -0.7 3,033,938 - -2.9 3,033,938 - -1.7 3,033,938 - -0.7 3,034,006 - AMB_RS14270 0.10 -0.6 3,034,360 + AMB_RS14270 0.69 +0.3 3,034,360 + AMB_RS14270 0.69 +0.3 3,034,455 - AMB_RS14270 0.85 -1.3 3,034,496 + -2.7 3,034,496 + +1.3 3,034,578 + -1.3 3,034,578 + -0.7 3,034,578 + -0.7 3,036,402 - -0.3 3,036,402 - +0.3 3,036,402 - -1.3 3,036,492 - -1.3 3,036,557 + -0.4 3,036,558 - +0.3 3,036,568 - +0.0
Or see this region's nucleotide sequence