Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14005

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS13995 and AMB_RS14000 are separated by 1 nucleotidesAMB_RS14000 and AMB_RS14005 are separated by 22 nucleotidesAMB_RS14005 and AMB_RS14010 overlap by 10 nucleotidesAMB_RS14010 and AMB_RS14015 are separated by 248 nucleotidesAMB_RS14015 and AMB_RS23465 are separated by 130 nucleotides AMB_RS13995: AMB_RS13995 - NADH-quinone oxidoreductase subunit D, at 2,970,845 to 2,972,023 _RS13995 AMB_RS14000: AMB_RS14000 - NADH-quinone oxidoreductase subunit C, at 2,972,025 to 2,972,624 _RS14000 AMB_RS14005: AMB_RS14005 - NADH-quinone oxidoreductase subunit NuoB, at 2,972,647 to 2,973,213 _RS14005 AMB_RS14010: AMB_RS14010 - NADH-quinone oxidoreductase subunit A, at 2,973,204 to 2,973,569 _RS14010 AMB_RS14015: AMB_RS14015 - tRNA-Asp, at 2,973,818 to 2,973,894 _RS14015 AMB_RS23465: AMB_RS23465 - methyl-accepting chemotaxis protein, at 2,974,025 to 2,976,097 _RS23465 Position (kb) 2972 2973 2974Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2972.594 kb on - strandat 2973.747 kb on - strandat 2973.747 kb on - strandat 2973.916 kb on - strandat 2973.927 kb on - strandat 2973.989 kb on + strandat 2973.989 kb on + strandat 2974.024 kb on - strandat 2974.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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2,972,594 - -0.7
2,973,747 - -1.7
2,973,747 - +0.3
2,973,916 - -0.1
2,973,927 - -1.3
2,973,989 + -4.6
2,973,989 + -2.3
2,974,024 - -0.3
2,974,024 - -2.6

Or see this region's nucleotide sequence