Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS13995 and AMB_RS14000 are separated by 1 nucleotides AMB_RS14000 and AMB_RS14005 are separated by 22 nucleotides AMB_RS14005 and AMB_RS14010 overlap by 10 nucleotides AMB_RS14010 and AMB_RS14015 are separated by 248 nucleotides AMB_RS14015 and AMB_RS23465 are separated by 130 nucleotides
AMB_RS13995: AMB_RS13995 - NADH-quinone oxidoreductase subunit D, at 2,970,845 to 2,972,023
_RS13995
AMB_RS14000: AMB_RS14000 - NADH-quinone oxidoreductase subunit C, at 2,972,025 to 2,972,624
_RS14000
AMB_RS14005: AMB_RS14005 - NADH-quinone oxidoreductase subunit NuoB, at 2,972,647 to 2,973,213
_RS14005
AMB_RS14010: AMB_RS14010 - NADH-quinone oxidoreductase subunit A, at 2,973,204 to 2,973,569
_RS14010
AMB_RS14015: AMB_RS14015 - tRNA-Asp, at 2,973,818 to 2,973,894
_RS14015
AMB_RS23465: AMB_RS23465 - methyl-accepting chemotaxis protein, at 2,974,025 to 2,976,097
_RS23465
Position (kb)
2972
2973
2974 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2972.594 kb on - strand at 2973.747 kb on - strand at 2973.747 kb on - strand at 2973.916 kb on - strand at 2973.927 kb on - strand at 2973.989 kb on + strand at 2973.989 kb on + strand at 2974.024 kb on - strand at 2974.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 2,972,594 - -0.7 2,973,747 - -1.7 2,973,747 - +0.3 2,973,916 - -0.1 2,973,927 - -1.3 2,973,989 + -4.6 2,973,989 + -2.3 2,974,024 - -0.3 2,974,024 - -2.6
Or see this region's nucleotide sequence