Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS13225

Experiment: an_mag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	an_mag_3
2,813,602	+		AMB_RS13215	0.75	-0.7
2,813,626	+		AMB_RS13215	0.76	-1.3
2,813,627	-		AMB_RS13215	0.76	+0.4
2,813,627	-		AMB_RS13215	0.76	-2.5
2,813,699	+		AMB_RS13215	0.81	+0.3
2,813,699	+		AMB_RS13215	0.81	+0.3
2,813,700	-		AMB_RS13215	0.81	+0.3
2,813,701	+		AMB_RS13215	0.81	+0.3
2,813,701	+		AMB_RS13215	0.81	-2.7
2,813,701	+		AMB_RS13215	0.81	-0.7
2,813,701	+		AMB_RS13215	0.81	-2.3
2,813,701	+		AMB_RS13215	0.81	-2.5
2,813,701	+		AMB_RS13215	0.81	-0.7
2,813,701	+		AMB_RS13215	0.81	-0.3
2,813,702	-		AMB_RS13215	0.81	+0.2
2,813,702	-		AMB_RS13215	0.81	+0.3
2,813,768	+		AMB_RS13215	0.85	+0.1
2,813,768	+		AMB_RS13215	0.85	-1.3
2,813,768	+		AMB_RS13215	0.85	+1.8
2,813,768	+		AMB_RS13215	0.85	-1.7
2,813,768	+		AMB_RS13215	0.85	+0.1
2,813,768	+		AMB_RS13215	0.85	-2.3
2,813,768	+		AMB_RS13215	0.85	-1.7
2,813,769	-		AMB_RS13215	0.85	-3.3
2,813,769	-		AMB_RS13215	0.85	-0.7
2,813,769	-		AMB_RS13215	0.85	-2.1
2,813,769	-		AMB_RS13215	0.85	+0.1
2,813,769	-		AMB_RS13215	0.85	+0.3
2,813,769	-		AMB_RS13215	0.85	-2.3
2,813,770	+		AMB_RS13215	0.85	-0.7
2,813,770	+		AMB_RS13215	0.85	-0.7
2,813,770	+		AMB_RS13215	0.85	-2.3
2,813,770	+		AMB_RS13215	0.85	-2.1
2,813,770	+		AMB_RS13215	0.85	+0.3
2,813,771	-		AMB_RS13215	0.85	-1.3
2,813,771	-		AMB_RS13215	0.85	-0.7
2,813,771	-		AMB_RS13215	0.85	-3.2
2,813,771	-		AMB_RS13215	0.85	-0.2
2,813,771	-		AMB_RS13215	0.85	+0.3
2,813,771	-		AMB_RS13215	0.85	+0.3
2,813,771	-		AMB_RS13215	0.85	-0.5
2,813,827	+		AMB_RS13215	0.88	-1.7
2,813,866	+				-1.3
2,813,866	+				-0.7
2,813,867	-				-0.7
2,813,867	-				-0.2
2,813,867	-				+0.2
2,814,021	+				-2.4
2,814,022	-				+0.3
2,814,022	-				+0.3
2,814,022	-				-2.1
2,814,022	-				+0.3
2,814,087	+		AMB_RS13220	0.21	-1.7
2,814,088	-		AMB_RS13220	0.22	+0.1
2,814,088	-		AMB_RS13220	0.22	-2.1
2,814,219	+		AMB_RS13220	0.63	-3.1
2,814,219	+		AMB_RS13220	0.63	+0.3
2,814,219	+		AMB_RS13220	0.63	-0.3
2,814,219	+		AMB_RS13220	0.63	-1.7
2,814,219	+		AMB_RS13220	0.63	+0.3
2,814,220	-		AMB_RS13220	0.63	-2.1
2,814,220	-		AMB_RS13220	0.63	-1.7
2,814,222	+		AMB_RS13220	0.64	-3.6
2,814,222	+		AMB_RS13220	0.64	-1.3
2,814,223	-		AMB_RS13220	0.64	+0.3
2,814,223	-		AMB_RS13220	0.64	+0.3
2,814,223	-		AMB_RS13220	0.64	+0.1
2,814,223	-		AMB_RS13220	0.64	-2.1
2,814,265	+		AMB_RS13220	0.78	-1.3
2,814,315	+				-2.1
2,814,315	+				-0.1
2,814,315	+				-1.7
2,814,315	+				+0.3
2,814,316	-				-1.3
2,814,316	-				+0.3
2,814,351	-				-0.2
2,814,354	+				-0.7
2,814,354	+				-0.7
2,814,354	+				-2.5
2,814,354	+				+0.3
2,814,354	+				-0.5
2,814,354	+				+0.3
2,814,354	+				+0.3
2,814,354	+				+0.3
2,814,354	+				+0.3
2,814,354	+				-1.3
2,814,354	+				-2.6
2,814,355	-				-0.3
2,814,355	-				-2.1
2,814,355	-				-0.3
2,814,355	-				-1.7
2,814,355	-				+0.3
2,814,355	-				+0.2
2,814,355	-				-0.2
2,814,355	-				-2.1
2,814,355	-				-4.2
2,814,355	-				-1.3
2,814,355	-				+0.3
2,814,371	+				-0.7
2,814,425	+				-0.7
2,814,548	+				-0.5
2,814,548	+				-1.9
2,814,548	+				+0.3
2,814,549	-				-1.3
2,814,549	-				+0.3
2,814,599	+				-0.2
2,814,599	+				-2.1
2,814,678	-				-2.3
2,814,678	-				-3.1
2,814,678	-				+0.1
2,814,678	-				+0.3
2,814,714	-				+0.3
2,814,821	+				+0.3
2,814,821	+				-0.2
2,814,822	-				+0.2
2,814,822	-				+0.3
2,814,822	-				-0.7
2,814,863	+				-1.3
2,814,863	+				-0.7
2,814,864	-				-1.7
2,814,864	-				-0.7
2,814,971	+		AMB_RS13225	0.13	-2.1
2,814,972	-		AMB_RS13225	0.13	-0.3
2,814,972	-		AMB_RS13225	0.13	-1.3
2,814,973	+		AMB_RS13225	0.13	+0.3
2,814,973	+		AMB_RS13225	0.13	-0.7
2,814,974	-		AMB_RS13225	0.13	+1.3
2,814,974	-		AMB_RS13225	0.13	-0.7
2,814,974	-		AMB_RS13225	0.13	-3.1
2,814,974	-		AMB_RS13225	0.13	-1.7
2,814,974	-		AMB_RS13225	0.13	-0.7
2,814,989	+		AMB_RS13225	0.14	-0.0
2,814,989	+		AMB_RS13225	0.14	-1.5
2,814,990	-		AMB_RS13225	0.14	+1.6
2,815,124	-		AMB_RS13225	0.19	+0.3
2,815,127	+		AMB_RS13225	0.19	-1.1
2,815,127	+		AMB_RS13225	0.19	-2.5
2,815,127	+		AMB_RS13225	0.19	-0.7
2,815,127	+		AMB_RS13225	0.19	-2.9
2,815,128	-		AMB_RS13225	0.19	+0.3
2,815,175	+		AMB_RS13225	0.21	-0.7
2,815,223	+		AMB_RS13225	0.22	+0.8
2,815,223	+		AMB_RS13225	0.22	+0.3
2,815,224	-		AMB_RS13225	0.22	+0.3
2,815,322	+		AMB_RS13225	0.26	-0.7
2,815,323	-		AMB_RS13225	0.26	-2.3
2,815,328	+		AMB_RS13225	0.26	-0.7
2,815,328	+		AMB_RS13225	0.26	-0.7
2,815,328	+		AMB_RS13225	0.26	+0.5
2,815,329	-		AMB_RS13225	0.26	-0.7
2,815,329	-		AMB_RS13225	0.26	-1.3
2,815,329	-		AMB_RS13225	0.26	+0.3
2,815,329	-		AMB_RS13225	0.26	+0.3
2,815,330	+		AMB_RS13225	0.26	-3.2
2,815,331	-		AMB_RS13225	0.26	-0.1
2,815,331	-		AMB_RS13225	0.26	-0.7
2,815,475	+		AMB_RS13225	0.31	-1.2
2,815,475	+		AMB_RS13225	0.31	-1.3
2,815,476	-		AMB_RS13225	0.31	-0.0
2,815,476	-		AMB_RS13225	0.31	+0.3
2,815,476	-		AMB_RS13225	0.31	-2.4
2,815,476	-		AMB_RS13225	0.31	-2.1
2,815,508	+		AMB_RS13225	0.33	-0.7
2,815,508	+		AMB_RS13225	0.33	-0.3
2,815,509	-		AMB_RS13225	0.33	+0.3
2,815,509	-		AMB_RS13225	0.33	+0.5
2,815,509	-		AMB_RS13225	0.33	-1.7
2,815,509	-		AMB_RS13225	0.33	-3.9
2,815,509	-		AMB_RS13225	0.33	-2.1
2,815,515	-		AMB_RS13225	0.33	-0.7
2,815,559	+		AMB_RS13225	0.34	-0.7
2,815,559	+		AMB_RS13225	0.34	-1.3
2,815,560	-		AMB_RS13225	0.34	-1.1
2,815,560	-		AMB_RS13225	0.34	+0.3
2,815,560	-		AMB_RS13225	0.34	-2.5
2,815,577	+		AMB_RS13225	0.35	-1.7
2,815,577	+		AMB_RS13225	0.35	-1.7
2,815,577	+		AMB_RS13225	0.35	+0.3
2,815,577	+		AMB_RS13225	0.35	-2.1
2,815,577	+		AMB_RS13225	0.35	-2.5
2,815,577	+		AMB_RS13225	0.35	+0.3
2,815,578	-		AMB_RS13225	0.35	+0.3
2,815,578	-		AMB_RS13225	0.35	-1.7
2,815,671	-		AMB_RS13225	0.38	+0.3
2,815,671	-		AMB_RS13225	0.38	+0.3
2,815,671	-		AMB_RS13225	0.38	-0.7
2,815,937	+		AMB_RS13225	0.48	-2.1
2,815,938	-		AMB_RS13225	0.48	+0.0
2,816,075	-		AMB_RS13225	0.53	-2.5
2,816,110	+		AMB_RS13225	0.54	+0.3
2,816,110	+		AMB_RS13225	0.54	-0.7
2,816,110	+		AMB_RS13225	0.54	+0.3
2,816,110	+		AMB_RS13225	0.54	+0.3
2,816,111	-		AMB_RS13225	0.54	-2.9
2,816,111	-		AMB_RS13225	0.54	-0.2
2,816,111	-		AMB_RS13225	0.54	-0.2
2,816,115	-		AMB_RS13225	0.54	-0.7
2,816,115	-		AMB_RS13225	0.54	-0.8
2,816,410	-		AMB_RS13225	0.65	+0.4
2,816,523	+		AMB_RS13225	0.69	-3.0
2,816,734	-		AMB_RS13225	0.77	-2.1
2,816,747	+		AMB_RS13225	0.77	-1.7
2,816,747	+		AMB_RS13225	0.77	+0.3
2,816,867	+		AMB_RS13225	0.82	-0.7
2,816,894	+		AMB_RS13225	0.83	-1.7
2,816,894	+		AMB_RS13225	0.83	+0.3
2,816,894	+		AMB_RS13225	0.83	-1.3
2,816,894	+		AMB_RS13225	0.83	-1.3
2,816,894	+		AMB_RS13225	0.83	+0.3
2,816,894	+		AMB_RS13225	0.83	-1.3
2,816,895	-		AMB_RS13225	0.83	-3.4
2,816,895	-		AMB_RS13225	0.83	-1.3
2,816,895	-		AMB_RS13225	0.83	+0.3
2,816,895	-		AMB_RS13225	0.83	-0.7
2,816,895	-		AMB_RS13225	0.83	+0.3
2,816,895	-		AMB_RS13225	0.83	+0.3
2,817,277	+				-1.3
2,817,277	+				-0.7
2,817,277	+				-0.7
2,817,278	-				+0.3
2,817,304	-				-1.0
2,817,453	+		AMB_RS13230	0.16	-1.7
2,817,453	+		AMB_RS13230	0.16	+0.3
2,817,454	-		AMB_RS13230	0.16	-1.7
2,817,457	+		AMB_RS13230	0.17	-1.3
2,817,457	+		AMB_RS13230	0.17	-1.7
2,817,457	+		AMB_RS13230	0.17	+0.3
2,817,457	+		AMB_RS13230	0.17	+0.1
2,817,457	+		AMB_RS13230	0.17	-2.5
2,817,457	+		AMB_RS13230	0.17	-2.1
2,817,457	+		AMB_RS13230	0.17	-0.7
2,817,457	+		AMB_RS13230	0.17	+0.3
2,817,458	-		AMB_RS13230	0.17	-0.3
2,817,458	-		AMB_RS13230	0.17	-0.6
2,817,458	-		AMB_RS13230	0.17	-0.2
2,817,458	-		AMB_RS13230	0.17	-1.1
2,817,458	-		AMB_RS13230	0.17	-0.7
2,817,458	-		AMB_RS13230	0.17	-0.3
2,817,514	+		AMB_RS13230	0.24	-0.5
2,817,644	+		AMB_RS13230	0.39	+0.3
2,817,644	+		AMB_RS13230	0.39	-2.1
2,817,708	-		AMB_RS13230	0.47	+0.3
2,817,736	+		AMB_RS13230	0.50	-1.4
2,817,737	-		AMB_RS13230	0.50	-0.4
2,818,108	+				-0.3
2,818,109	-				-2.1
2,818,121	-				-0.8
2,818,150	+				+0.3
2,818,150	+				+0.3
2,818,151	-				-0.0
2,818,226	-				+0.3
2,818,226	-				+0.3
2,818,284	+				-0.4
2,818,284	+				-2.1
2,818,302	+				-1.3
2,818,302	+				-3.1
2,818,302	+				+0.3
2,818,302	+				+0.3
2,818,302	+				+0.3
2,818,302	+				+0.0
2,818,303	-				-1.3
2,818,303	-				+0.3
2,818,303	-				-1.7