Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12570

Experiment: an_mag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	an_mag_3
2,677,589	+		AMB_RS12565	0.41	-1.8
2,677,590	-		AMB_RS12565	0.41	-1.4
2,677,598	+		AMB_RS12565	0.42	+0.1
2,677,598	+		AMB_RS12565	0.42	-1.4
2,677,598	+		AMB_RS12565	0.42	+0.2
2,677,598	+		AMB_RS12565	0.42	-0.8
2,677,599	-		AMB_RS12565	0.42	-3.4
2,677,650	+		AMB_RS12565	0.46	-1.8
2,677,652	+		AMB_RS12565	0.46	-1.4
2,677,895	+		AMB_RS12565	0.67	-0.1
2,677,896	-		AMB_RS12565	0.67	-0.8
2,678,108	+		AMB_RS12565	0.85	-0.2
2,678,274	+				-1.4
2,678,292	+				-2.4
2,678,294	+				+0.2
2,678,294	+				-1.8
2,678,294	+				-0.8
2,678,295	-				-1.4
2,678,295	-				-0.8
2,678,329	-				-0.3
2,678,359	-				-1.4
2,678,444	+				-0.8
2,678,444	+				-3.3
2,678,445	-				-0.1
2,678,445	-				-0.8
2,678,445	-				-1.4
2,678,445	-				+0.2
2,678,510	+				-2.8
2,678,510	+				-1.6
2,678,510	+				-0.8
2,678,510	+				+0.2
2,678,510	+				-0.4
2,678,511	-				-1.4
2,678,511	-				-2.8
2,678,511	-				+0.2
2,678,511	-				+0.2
2,678,660	+		AMB_RS12570	0.15	-0.8
2,678,742	+		AMB_RS12570	0.20	+0.2
2,678,743	-		AMB_RS12570	0.21	-0.8
2,678,744	+		AMB_RS12570	0.21	-3.1
2,678,745	-		AMB_RS12570	0.21	-0.8
2,678,779	-		AMB_RS12570	0.23	+0.2
2,678,831	+		AMB_RS12570	0.26	-1.4
2,678,832	-		AMB_RS12570	0.26	-0.1
2,678,858	+		AMB_RS12570	0.28	-2.4
2,678,858	+		AMB_RS12570	0.28	+0.2
2,678,946	-		AMB_RS12570	0.33	-0.8
2,678,946	-		AMB_RS12570	0.33	+0.2
2,678,946	-		AMB_RS12570	0.33	-2.1
2,678,946	-		AMB_RS12570	0.33	+0.2
2,678,946	-		AMB_RS12570	0.33	-2.4
2,679,038	+		AMB_RS12570	0.39	-0.3
2,679,038	+		AMB_RS12570	0.39	-2.8
2,679,039	-		AMB_RS12570	0.39	+0.2
2,679,039	-		AMB_RS12570	0.39	-1.4
2,679,039	-		AMB_RS12570	0.39	+0.2
2,679,056	+		AMB_RS12570	0.40	+0.2
2,679,057	-		AMB_RS12570	0.40	-0.7
2,679,216	+		AMB_RS12570	0.49	-0.8
2,679,216	+		AMB_RS12570	0.49	-1.8
2,679,216	+		AMB_RS12570	0.49	+0.2
2,679,216	+		AMB_RS12570	0.49	-0.5
2,679,216	+		AMB_RS12570	0.49	+0.2
2,679,216	+		AMB_RS12570	0.49	+1.2
2,679,216	+		AMB_RS12570	0.49	-1.4
2,679,216	+		AMB_RS12570	0.49	-0.8
2,679,217	-		AMB_RS12570	0.50	+0.2
2,679,217	-		AMB_RS12570	0.50	-0.5
2,679,217	-		AMB_RS12570	0.50	+0.2
2,679,217	-		AMB_RS12570	0.50	-2.1
2,679,217	-		AMB_RS12570	0.50	+0.2
2,679,217	-		AMB_RS12570	0.50	-1.4
2,679,217	-		AMB_RS12570	0.50	+0.2
2,679,252	+		AMB_RS12570	0.52	-2.1
2,679,252	+		AMB_RS12570	0.52	-3.0
2,679,252	+		AMB_RS12570	0.52	-1.8
2,679,252	+		AMB_RS12570	0.52	+0.2
2,679,252	+		AMB_RS12570	0.52	-1.4
2,679,253	-		AMB_RS12570	0.52	-0.5
2,679,253	-		AMB_RS12570	0.52	-0.4
2,679,253	-		AMB_RS12570	0.52	-1.8
2,679,253	-		AMB_RS12570	0.52	-0.1
2,679,253	-		AMB_RS12570	0.52	+0.2
2,679,359	+		AMB_RS12570	0.58	-3.1
2,679,359	+		AMB_RS12570	0.58	+0.3
2,679,411	+		AMB_RS12570	0.61	-1.4
2,679,411	+		AMB_RS12570	0.61	-0.1
2,679,411	+		AMB_RS12570	0.61	-0.8
2,679,411	+		AMB_RS12570	0.61	+0.2
2,679,411	+		AMB_RS12570	0.61	+0.1
2,679,411	+		AMB_RS12570	0.61	-2.1
2,679,413	+		AMB_RS12570	0.62	-0.4
2,679,413	+		AMB_RS12570	0.62	-0.9
2,679,413	+		AMB_RS12570	0.62	-2.1
2,679,413	+		AMB_RS12570	0.62	-0.8
2,679,413	+		AMB_RS12570	0.62	-2.6
2,679,414	-		AMB_RS12570	0.62	-0.1
2,679,431	+		AMB_RS12570	0.63	-0.8
2,679,431	+		AMB_RS12570	0.63	-1.8
2,679,431	+		AMB_RS12570	0.63	-0.8
2,679,432	-		AMB_RS12570	0.63	-1.4
2,679,432	-		AMB_RS12570	0.63	-1.4
2,679,432	-		AMB_RS12570	0.63	-1.8
2,679,432	-		AMB_RS12570	0.63	+0.2
2,679,432	-		AMB_RS12570	0.63	-1.1
2,679,432	-		AMB_RS12570	0.63	-0.1
2,679,432	-		AMB_RS12570	0.63	-0.8
2,679,470	+		AMB_RS12570	0.65	+0.2
2,679,470	+		AMB_RS12570	0.65	+0.2
2,679,471	-		AMB_RS12570	0.65	-0.8
2,679,471	-		AMB_RS12570	0.65	+0.2
2,679,471	-		AMB_RS12570	0.65	-2.6
2,679,518	+		AMB_RS12570	0.68	-1.4
2,679,518	+		AMB_RS12570	0.68	+0.2
2,679,519	-		AMB_RS12570	0.68	-2.1
2,679,551	+		AMB_RS12570	0.70	-0.8
2,679,551	+		AMB_RS12570	0.70	+0.2
2,679,551	+		AMB_RS12570	0.70	-1.4
2,679,646	-		AMB_RS12570	0.76	-0.6
2,679,646	-		AMB_RS12570	0.76	+0.2
2,679,789	-		AMB_RS12570	0.85	-0.8
2,679,884	+				-0.7
2,679,885	-				-2.3
2,679,885	-				+0.0
2,679,885	-				-2.1
2,679,900	+				-3.7
2,679,901	-				-0.4
2,679,901	-				+0.2
2,679,989	+				-0.6
2,679,990	-				-1.8
2,679,990	-				-1.4
2,680,023	-				-0.8
2,680,023	-				-0.8
2,680,023	-				-0.8
2,680,075	+				+0.2
2,680,158	+				-2.6
2,680,158	+				-2.6
2,680,159	-				-1.8
2,680,159	-				-0.1
2,680,519	-		AMB_RS12575	0.23	-1.4
2,680,634	+		AMB_RS12575	0.32	+0.2
2,680,634	+		AMB_RS12575	0.32	-2.2
2,680,634	+		AMB_RS12575	0.32	-2.9
2,680,635	-		AMB_RS12575	0.32	-0.8
2,680,635	-		AMB_RS12575	0.32	-1.4
2,680,635	-		AMB_RS12575	0.32	-1.8
2,680,703	+		AMB_RS12575	0.38	+0.2
2,680,703	+		AMB_RS12575	0.38	-0.8
2,680,703	+		AMB_RS12575	0.38	+0.1
2,680,704	-		AMB_RS12575	0.38	+0.2
2,680,704	-		AMB_RS12575	0.38	+0.2
2,680,919	+		AMB_RS12575	0.55	+0.2
2,680,919	+		AMB_RS12575	0.55	-2.3
2,680,920	-		AMB_RS12575	0.56	+0.2
2,680,920	-		AMB_RS12575	0.56	+0.2
2,680,920	-		AMB_RS12575	0.56	+1.2
2,680,970	+		AMB_RS12575	0.60	+0.2
2,680,971	-		AMB_RS12575	0.60	-2.4
2,680,971	-		AMB_RS12575	0.60	+0.2
2,680,973	-		AMB_RS12575	0.60	+0.2