Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11835

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS11825 and AMB_RS11830 are separated by 18 nucleotidesAMB_RS11830 and AMB_RS11835 overlap by 29 nucleotidesAMB_RS11835 and AMB_RS11840 are separated by 134 nucleotidesAMB_RS11840 and AMB_RS11845 overlap by 4 nucleotides AMB_RS11825: AMB_RS11825 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 2,547,457 to 2,548,533 _RS11825 AMB_RS11830: AMB_RS11830 - riboflavin synthase, at 2,548,552 to 2,549,144 _RS11830 AMB_RS11835: AMB_RS11835 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 2,549,116 to 2,550,264 _RS11835 AMB_RS11840: AMB_RS11840 - 6,7-dimethyl-8-ribityllumazine synthase, at 2,550,399 to 2,550,851 _RS11840 AMB_RS11845: AMB_RS11845 - N utilization substance protein B, at 2,550,848 to 2,551,318 _RS11845 Position (kb) 2549 2550 2551Strain fitness (log2 ratio) -3 -2 -1 0 1at 2548.529 kb on + strandat 2548.531 kb on + strandat 2548.531 kb on + strandat 2549.170 kb on + strandat 2550.337 kb on + strandat 2550.338 kb on - strandat 2550.378 kb on + strandat 2550.378 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strandat 2550.382 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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2,548,529 + -1.9
2,548,531 + +0.1
2,548,531 + -2.9
2,549,170 + +0.1
2,550,337 + +0.1
2,550,338 - -1.4
2,550,378 + +1.1
2,550,378 + -2.8
2,550,382 + -2.4
2,550,382 + +0.1
2,550,382 + -2.9
2,550,382 + -1.4
2,550,382 + -1.4
2,550,382 + -1.9

Or see this region's nucleotide sequence