Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11655

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS11645 and AMB_RS11650 are separated by 144 nucleotidesAMB_RS11650 and AMB_RS11655 are separated by 395 nucleotidesAMB_RS11655 and AMB_RS11660 are separated by 68 nucleotidesAMB_RS11660 and AMB_RS11665 are separated by 31 nucleotides AMB_RS11645: AMB_RS11645 - propionyl-CoA synthetase, at 2,505,613 to 2,507,529 _RS11645 AMB_RS11650: AMB_RS11650 - hypothetical protein, at 2,507,674 to 2,507,901 _RS11650 AMB_RS11655: AMB_RS11655 - GTP-binding protein, at 2,508,297 to 2,509,340 _RS11655 AMB_RS11660: AMB_RS11660 - phosphoribosyl-AMP cyclohydrolase, at 2,509,409 to 2,509,807 _RS11660 AMB_RS11665: AMB_RS11665 - zinc ABC transporter substrate-binding protein, at 2,509,839 to 2,510,750 _RS11665 Position (kb) 2508 2509 2510Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2507.492 kb on + strandat 2507.492 kb on + strandat 2507.492 kb on + strandat 2507.527 kb on + strandat 2507.527 kb on + strandat 2507.528 kb on - strandat 2507.528 kb on - strandat 2507.604 kb on + strandat 2507.640 kb on + strandat 2507.640 kb on + strandat 2507.641 kb on - strandat 2507.641 kb on - strandat 2507.641 kb on - strandat 2507.960 kb on - strandat 2507.960 kb on - strandat 2507.980 kb on + strandat 2507.980 kb on + strandat 2507.980 kb on + strandat 2507.980 kb on + strandat 2507.980 kb on + strandat 2507.981 kb on - strandat 2507.981 kb on - strandat 2507.981 kb on - strandat 2507.984 kb on + strandat 2507.984 kb on + strandat 2507.984 kb on + strandat 2507.985 kb on - strandat 2507.985 kb on - strandat 2507.985 kb on - strandat 2507.986 kb on + strandat 2507.986 kb on + strandat 2507.987 kb on - strandat 2507.987 kb on - strandat 2508.067 kb on + strandat 2508.067 kb on + strandat 2508.108 kb on + strandat 2508.291 kb on + strandat 2508.292 kb on - strandat 2508.292 kb on - strandat 2508.311 kb on + strandat 2508.312 kb on - strandat 2508.608 kb on + strand, within AMB_RS11655at 2508.716 kb on + strand, within AMB_RS11655at 2508.716 kb on + strand, within AMB_RS11655at 2508.974 kb on + strand, within AMB_RS11655at 2508.974 kb on + strand, within AMB_RS11655at 2508.974 kb on + strand, within AMB_RS11655at 2508.974 kb on + strand, within AMB_RS11655at 2508.974 kb on + strand, within AMB_RS11655at 2508.975 kb on - strand, within AMB_RS11655at 2508.977 kb on - strand, within AMB_RS11655at 2509.357 kb on + strandat 2509.410 kb on + strandat 2509.411 kb on - strandat 2509.411 kb on - strandat 2509.411 kb on - strandat 2509.411 kb on - strandat 2509.815 kb on - strandat 2509.898 kb on - strandat 2510.165 kb on - strand, within AMB_RS11665at 2510.255 kb on - strand, within AMB_RS11665

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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2,507,492 + -1.5
2,507,492 + -1.5
2,507,492 + -1.5
2,507,527 + -2.2
2,507,527 + -0.9
2,507,528 - -1.2
2,507,528 - +0.1
2,507,604 + +0.1
2,507,640 + -1.9
2,507,640 + +0.2
2,507,641 - -1.9
2,507,641 - +0.1
2,507,641 - -0.9
2,507,960 - -1.5
2,507,960 - -0.9
2,507,980 + +0.1
2,507,980 + +0.1
2,507,980 + -1.9
2,507,980 + -2.5
2,507,980 + +0.7
2,507,981 - -0.9
2,507,981 - -1.5
2,507,981 - -0.3
2,507,984 + -0.2
2,507,984 + -2.1
2,507,984 + +0.1
2,507,985 - +0.1
2,507,985 - +0.1
2,507,985 - -1.9
2,507,986 + +0.1
2,507,986 + +0.1
2,507,987 - -1.5
2,507,987 - +0.1
2,508,067 + -0.9
2,508,067 + -1.9
2,508,108 + +0.1
2,508,291 + -2.2
2,508,292 - -1.9
2,508,292 - -3.8
2,508,311 + +0.1
2,508,312 - -0.9
2,508,608 + AMB_RS11655 0.30 -3.1
2,508,716 + AMB_RS11655 0.40 -0.7
2,508,716 + AMB_RS11655 0.40 +0.1
2,508,974 + AMB_RS11655 0.65 -0.2
2,508,974 + AMB_RS11655 0.65 -2.9
2,508,974 + AMB_RS11655 0.65 -2.9
2,508,974 + AMB_RS11655 0.65 -3.2
2,508,974 + AMB_RS11655 0.65 -0.9
2,508,975 - AMB_RS11655 0.65 -0.9
2,508,977 - AMB_RS11655 0.65 +0.1
2,509,357 + -2.7
2,509,410 + +0.1
2,509,411 - -2.2
2,509,411 - -0.9
2,509,411 - +0.1
2,509,411 - -0.1
2,509,815 - -3.1
2,509,898 - -1.9
2,510,165 - AMB_RS11665 0.36 -1.5
2,510,255 - AMB_RS11665 0.46 -1.9

Or see this region's nucleotide sequence