Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10750

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS10740 and AMB_RS10745 are separated by 98 nucleotidesAMB_RS10745 and AMB_RS10750 are separated by 163 nucleotidesAMB_RS10750 and AMB_RS10755 are separated by 124 nucleotides AMB_RS10740: AMB_RS10740 - response regulator, at 2,301,615 to 2,302,076 _RS10740 AMB_RS10745: AMB_RS10745 - 30S ribosomal protein S4, at 2,302,175 to 2,302,792 _RS10745 AMB_RS10750: AMB_RS10750 - RNA methyltransferase, at 2,302,956 to 2,303,723 _RS10750 AMB_RS10755: AMB_RS10755 - citramalate synthase, at 2,303,848 to 2,305,488 _RS10755 Position (kb) 2302 2303 2304Strain fitness (log2 ratio) -2 -1 0 1at 2302.041 kb on - strandat 2302.047 kb on + strandat 2302.987 kb on + strandat 2302.987 kb on + strandat 2302.987 kb on + strandat 2302.987 kb on + strandat 2302.988 kb on - strandat 2302.988 kb on - strandat 2303.239 kb on + strand, within AMB_RS10750at 2303.240 kb on - strand, within AMB_RS10750at 2303.240 kb on - strand, within AMB_RS10750at 2303.282 kb on - strand, within AMB_RS10750at 2303.282 kb on - strand, within AMB_RS10750at 2303.405 kb on + strand, within AMB_RS10750at 2303.405 kb on + strand, within AMB_RS10750at 2303.449 kb on + strand, within AMB_RS10750at 2303.449 kb on + strand, within AMB_RS10750at 2303.450 kb on - strand, within AMB_RS10750at 2303.450 kb on - strand, within AMB_RS10750at 2303.741 kb on + strandat 2303.741 kb on + strandat 2303.741 kb on + strandat 2303.741 kb on + strandat 2303.741 kb on + strandat 2303.742 kb on - strandat 2303.742 kb on - strandat 2303.822 kb on - strandat 2303.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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2,302,041 - +0.1
2,302,047 + +0.1
2,302,987 + -0.9
2,302,987 + +0.1
2,302,987 + +0.1
2,302,987 + -2.5
2,302,988 - -1.5
2,302,988 - -1.9
2,303,239 + AMB_RS10750 0.37 +0.1
2,303,240 - AMB_RS10750 0.37 -0.2
2,303,240 - AMB_RS10750 0.37 +0.1
2,303,282 - AMB_RS10750 0.42 -0.3
2,303,282 - AMB_RS10750 0.42 -2.2
2,303,405 + AMB_RS10750 0.58 -0.9
2,303,405 + AMB_RS10750 0.58 -2.5
2,303,449 + AMB_RS10750 0.64 -0.9
2,303,449 + AMB_RS10750 0.64 +0.1
2,303,450 - AMB_RS10750 0.64 -1.9
2,303,450 - AMB_RS10750 0.64 -1.2
2,303,741 + -0.2
2,303,741 + -1.5
2,303,741 + -0.9
2,303,741 + +0.1
2,303,741 + +0.1
2,303,742 - -1.5
2,303,742 - -0.9
2,303,822 - +0.1
2,303,850 - -0.8

Or see this region's nucleotide sequence