Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09220

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS09215 and AMB_RS09220 are separated by 26 nucleotidesAMB_RS09220 and AMB_RS09225 are separated by 28 nucleotides AMB_RS09215: AMB_RS09215 - CTP synthetase, at 1,960,519 to 1,962,144 _RS09215 AMB_RS09220: AMB_RS09220 - 3-deoxy-8-phosphooctulonate synthase, at 1,962,171 to 1,963,022 _RS09220 AMB_RS09225: AMB_RS09225 - enolase, at 1,963,051 to 1,964,328 _RS09225 Position (kb) 1962 1963 1964Strain fitness (log2 ratio) -2 -1 0 1at 1962.158 kb on + strandat 1963.015 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
1,962,158 + -0.7
1,963,015 + -2.5

Or see this region's nucleotide sequence