Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS08820 and AMB_RS08825 are separated by 2 nucleotides AMB_RS08825 and AMB_RS08830 are separated by 4 nucleotides AMB_RS08830 and AMB_RS08835 are separated by 4 nucleotides AMB_RS08835 and AMB_RS08840 are separated by 72 nucleotides AMB_RS08840 and AMB_RS23330 are separated by 54 nucleotides
AMB_RS08815: AMB_RS08815 - phage tail protein, at 1,887,360 to 1,890,977
_RS08815
AMB_RS08820: AMB_RS08820 - hypothetical protein, at 1,890,887 to 1,891,270
_RS08820
AMB_RS08825: AMB_RS08825 - hypothetical protein, at 1,891,273 to 1,891,569
_RS08825
AMB_RS08830: AMB_RS08830 - hypothetical protein, at 1,891,574 to 1,891,963
_RS08830
AMB_RS08835: AMB_RS08835 - hypothetical protein, at 1,891,968 to 1,892,171
_RS08835
AMB_RS08840: AMB_RS08840 - transcriptional regulator, at 1,892,244 to 1,892,747
_RS08840
AMB_RS23330: AMB_RS23330 - hypothetical protein, at 1,892,802 to 1,893,638
_RS23330
Position (kb) 1891
1892
1893 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1891.192 kb on - strand, within AMB_RS08820 at 1891.333 kb on + strand, within AMB_RS08825 at 1891.334 kb on - strand, within AMB_RS08825 at 1891.334 kb on - strand, within AMB_RS08825 at 1891.388 kb on - strand, within AMB_RS08825 at 1891.388 kb on - strand, within AMB_RS08825 at 1891.388 kb on - strand, within AMB_RS08825 at 1891.388 kb on - strand, within AMB_RS08825 at 1891.388 kb on - strand, within AMB_RS08825 at 1891.388 kb on - strand, within AMB_RS08825 at 1891.388 kb on - strand, within AMB_RS08825 at 1891.520 kb on - strand, within AMB_RS08825 at 1891.520 kb on - strand, within AMB_RS08825 at 1891.520 kb on - strand, within AMB_RS08825 at 1891.913 kb on - strand, within AMB_RS08830 at 1891.999 kb on - strand, within AMB_RS08835 at 1892.170 kb on - strand at 1892.170 kb on - strand at 1892.170 kb on - strand at 1892.170 kb on - strand at 1892.249 kb on + strand at 1892.249 kb on + strand at 1892.249 kb on + strand at 1892.249 kb on + strand at 1892.249 kb on + strand at 1892.249 kb on + strand at 1892.249 kb on + strand at 1892.249 kb on + strand at 1892.250 kb on - strand at 1892.250 kb on - strand at 1892.250 kb on - strand at 1892.250 kb on - strand at 1892.250 kb on - strand at 1892.250 kb on - strand at 1892.250 kb on - strand at 1892.250 kb on - strand at 1892.250 kb on - strand at 1892.360 kb on + strand, within AMB_RS08840 at 1892.361 kb on - strand, within AMB_RS08840 at 1892.446 kb on - strand, within AMB_RS08840 at 1892.446 kb on - strand, within AMB_RS08840 at 1892.446 kb on - strand, within AMB_RS08840 at 1892.446 kb on - strand, within AMB_RS08840 at 1892.521 kb on - strand, within AMB_RS08840 at 1892.521 kb on - strand, within AMB_RS08840 at 1892.701 kb on - strand at 1892.701 kb on - strand at 1892.701 kb on - strand at 1892.701 kb on - strand at 1892.701 kb on - strand at 1892.701 kb on - strand at 1892.787 kb on - strand at 1892.889 kb on + strand, within AMB_RS23330 at 1892.890 kb on - strand, within AMB_RS23330 at 1893.150 kb on + strand, within AMB_RS23330 at 1893.150 kb on + strand, within AMB_RS23330 at 1893.150 kb on + strand, within AMB_RS23330 at 1893.150 kb on + strand, within AMB_RS23330 at 1893.151 kb on - strand, within AMB_RS23330 at 1893.151 kb on - strand, within AMB_RS23330
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 1,891,192 - AMB_RS08820 0.79 -1.3 1,891,333 + AMB_RS08825 0.20 -2.5 1,891,334 - AMB_RS08825 0.21 +0.3 1,891,334 - AMB_RS08825 0.21 -1.3 1,891,388 - AMB_RS08825 0.39 +0.3 1,891,388 - AMB_RS08825 0.39 -1.7 1,891,388 - AMB_RS08825 0.39 -0.7 1,891,388 - AMB_RS08825 0.39 -0.5 1,891,388 - AMB_RS08825 0.39 -0.7 1,891,388 - AMB_RS08825 0.39 +0.3 1,891,388 - AMB_RS08825 0.39 +0.3 1,891,520 - AMB_RS08825 0.83 -0.7 1,891,520 - AMB_RS08825 0.83 -2.3 1,891,520 - AMB_RS08825 0.83 -1.3 1,891,913 - AMB_RS08830 0.87 -2.0 1,891,999 - AMB_RS08835 0.15 -2.7 1,892,170 - -3.3 1,892,170 - -0.7 1,892,170 - -0.7 1,892,170 - -2.0 1,892,249 + +0.3 1,892,249 + +0.3 1,892,249 + -0.5 1,892,249 + +0.3 1,892,249 + -3.4 1,892,249 + +0.3 1,892,249 + +0.3 1,892,249 + -1.0 1,892,250 - -1.7 1,892,250 - +0.3 1,892,250 - -0.1 1,892,250 - +0.3 1,892,250 - -1.3 1,892,250 - -2.9 1,892,250 - +0.3 1,892,250 - +0.3 1,892,250 - -1.3 1,892,360 + AMB_RS08840 0.23 +0.3 1,892,361 - AMB_RS08840 0.23 -1.3 1,892,446 - AMB_RS08840 0.40 +0.3 1,892,446 - AMB_RS08840 0.40 -1.3 1,892,446 - AMB_RS08840 0.40 -2.0 1,892,446 - AMB_RS08840 0.40 +0.3 1,892,521 - AMB_RS08840 0.55 +0.3 1,892,521 - AMB_RS08840 0.55 -0.7 1,892,701 - +1.3 1,892,701 - -2.3 1,892,701 - -0.7 1,892,701 - -3.5 1,892,701 - -1.7 1,892,701 - -0.7 1,892,787 - -0.7 1,892,889 + AMB_RS23330 0.10 -2.8 1,892,890 - AMB_RS23330 0.11 +0.3 1,893,150 + AMB_RS23330 0.42 -2.7 1,893,150 + AMB_RS23330 0.42 -1.3 1,893,150 + AMB_RS23330 0.42 -2.5 1,893,150 + AMB_RS23330 0.42 +0.3 1,893,151 - AMB_RS23330 0.42 -3.1 1,893,151 - AMB_RS23330 0.42 +0.3
Or see this region's nucleotide sequence